PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001395.1_g00005.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GRAS
Protein Properties Length: 531aa    MW: 57899 Da    PI: 4.3895
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001395.1_g00005.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS356.83.3e-10917353011373
                     GRAS  11 avssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                               +++++  +a++ L rl++ +s+dgdp++R+a yf eAL +rl+r      +++p  e+s    +e + ++k+f++++P+ kf+hl
  Itr_sc001395.1_g00005.1 173 ELAESEPDNATKSLVRLRDSVSQDGDPTERVAYYFSEALYSRLSR----QPAKIPFVEAS---LEEFALSYKAFYDACPYSKFAHL 251
                              56788999*************************************....33345666666...999******************** PP

                     GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefn 179
                              taNqaIlea+e+++r+Hi+Df+i qG+QW+aLlqaLa+Rp+g+p  +Ri g+ +p  g   + +l +tg+rL++fA+ l+++fef+
  Itr_sc001395.1_g00005.1 252 TANQAILEATEKASRIHIVDFGIVQGIQWAALLQALATRPAGKPkYIRISGIPAPVLGksPTASLLATGNRLRDFAKVLDLNFEFD 337
                              ****************************************766659********9988889999********************** PP

                     GRAS 180 vlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyys 265
                              + v + + +l+ ++Lrv+p++alaVn++lql++llde++++ +   + Lkl ksl+P vv++ e e+++n+  Flerf++al+yys
  Itr_sc001395.1_g00005.1 338 P-VLTPIPELNESSLRVDPDDALAVNFMLQLYNLLDETTATVE---AALKLAKSLNPSVVTLGEYELSLNRVGFLERFTNALNYYS 419
                              *.799*******************************9999999...9*************************************** PP

                     GRAS 266 alfdsleaklpreseerikvErellgreivnvvacegae.rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgy 349
                               +f+sl+ ++pr+s er  vEr llgr+i  +v  +++e +re +e +e+W+  +e+aGF+p+pls++a++qak ll +++ s  y
  Itr_sc001395.1_g00005.1 420 LVFESLDPNMPRDSPERLQVERLLLGRRIAVMVGPAEQEtKRECTEDKEQWKILMETAGFEPLPLSHYAMSQAKILLWNYSySASY 505
                              *********************************987777599999************************************9999* PP

                     GRAS 350 rveeesgslv.lgWkdrpLvsvSaW 373
                               + e+   ++ l W+d+pL++vS+W
  Itr_sc001395.1_g00005.1 506 GLIESPPGFLsLAWNDEPLLTVSSW 530
                              99888666666************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098556.848137509IPR005202Transcription factor GRAS
PfamPF035141.1E-106173530IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 531 aa     Download sequence    Send to blast
MAYMCTDSGN LMAIAQQVIK QKQQQEQQQQ QQQQQQQILG VNSFCLNPWQ TPHPGLSGGP  60
SLGYGLGGAA FADPFQVVGG GGDGAEAGFQ FPSLEQHGGG VFPFADFGGG AGGEFDSDEW  120
MESLIGGGDS TGSSNLHSGC DAWQTSSEFG LYGSDPFAGP SRLSIASSAP SNELAESEPD  180
NATKSLVRLR DSVSQDGDPT ERVAYYFSEA LYSRLSRQPA KIPFVEASLE EFALSYKAFY  240
DACPYSKFAH LTANQAILEA TEKASRIHIV DFGIVQGIQW AALLQALATR PAGKPKYIRI  300
SGIPAPVLGK SPTASLLATG NRLRDFAKVL DLNFEFDPVL TPIPELNESS LRVDPDDALA  360
VNFMLQLYNL LDETTATVEA ALKLAKSLNP SVVTLGEYEL SLNRVGFLER FTNALNYYSL  420
VFESLDPNMP RDSPERLQVE RLLLGRRIAV MVGPAEQETK RECTEDKEQW KILMETAGFE  480
PLPLSHYAMS QAKILLWNYS YSASYGLIES PPGFLSLAWN DEPLLTVSSW H
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-14517553115375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (PubMed:20616154). Binds DNA in vitro (By similarity). {ECO:0000250|UniProtKB:Q53K16, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:20616154}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought and high salt stresses, and down-regulated by gibberellic acid (GA) treatment, but not by plant hormone abscisic acid (ABA) application in leaves. Under the salt treatment, expression is induced quickly, and it peaks at 3 hours. Under the drought treatment, the expression is not induced immediately, but reaches its maximum at 3 hours. Under the GA treatment, the expression becomes weaker within 5 hours. {ECO:0000269|PubMed:20616154}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019173060.10.0PREDICTED: scarecrow-like protein 4
RefseqXP_019173061.10.0PREDICTED: scarecrow-like protein 4
SwissprotA0A024B7I00.0SCL7_POPEU; SCARECROW-LIKE protein 7
TrEMBLA0A1S3YLC20.0A0A1S3YLC2_TOBAC; scarecrow-like protein 4
STRINGXP_009794663.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA89052429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.10.0GRAS family protein