PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc001387.1_g00002.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 769aa MW: 88553.4 Da PI: 4.773

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc001387.1_g00002.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	69.9	5.9e-22	162	246	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 ++Yn YAke+GF +r+++s ++++++e + ++C++eg+++ ++ + ++r+etr gC a++++++ ++++w+v++++leHn Itr_sc001387.1_g00002.1 162 NYYNCYAKELGFAIRVKSSWTKRNSKEKRGAVLCCNCEGFKTMKEAS-----TRRKETRRGCLAMIRLRLVDSNRWRVDEVKLEHN 242 69**************************************98877.....8999**************************** PP FAR1 87 Hela 90 H++ Itr_sc001387.1_g00002.1 243 HPFD 246 *986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.9E-19	162	246	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.5E-26	365	458	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.039	651	687	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	3.6E-4	661	685	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	4.0E-5	662	689	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 769 aa Download sequence Send to blast
MFSAMMADGS SFSPAGDGLS PNHDLEITME EGLENSEQVI GDEISDHEVE SDGVFDIEGN 60 DLENDGDHIL MIDSNDLENT AEQVLEFESS GHDNSEHVLE FGSTDEGHNT NQILEIQSNE 120 PENCTDGDTT IFHDQDGGTS QKKSYLPPVV GMEFESYEDA YNYYNCYAKE LGFAIRVKSS 180 WTKRNSKEKR GAVLCCNCEG FKTMKEASTR RKETRRGCLA MIRLRLVDSN RWRVDEVKLE 240 HNHPFDPERA QNCKSHKKMD SVAKRKLEPA VGVEVRTIKL YRSPTVDTLN YGSSNERDFG 300 NCIDASKCLK VNKGDFQLIC NFFSRMQLTN PNFFYIMDLN DEGNVRNVFW IDSRSRTSYS 360 YFGDVVLVDT TCLSKSYEIP LVVFFGVNHH GEALLLGCGL LVDESFETYI WVLRAWLTCM 420 SGRPPPTIIT DRCKALQNAV SEVFPRAHHC LCLSLVMQSI AETLGELEQP ELFYTVLNRV 480 VYNSLKVDEF EIAWEEMVQH FGISSHEWLQ KLYEDRERWA PVYLKDTFFA GMSVSQPGVS 540 TSHFFEGFVH KETNLKEFFD IYELILQRKH QKEALDDLES KEFNPVLRTR SNYELRLSEM 600 YTKEIFLSFQ VEVELMSTCF SVSQIHTNAP VITYMIKEQD TAGDTRDARN YEVMYDRVGQ 660 DVRCMCSCFN FKGYLCRHAL CVLDHNGVEE IPNQYILSRW RKDFKRLYSP DLGSNNIDIS 720 NPVQWFDHLY RRALQVVEEG MASQDHYMVA WQAFQESLNK VRLVADRHG

Sequence ? help Back to Top

Protein Sequence Length: 769 aa Download sequence Send to blast

MFSAMMADGS SFSPAGDGLS PNHDLEITME EGLENSEQVI GDEISDHEVE SDGVFDIEGN  60
DLENDGDHIL MIDSNDLENT AEQVLEFESS GHDNSEHVLE FGSTDEGHNT NQILEIQSNE  120
PENCTDGDTT IFHDQDGGTS QKKSYLPPVV GMEFESYEDA YNYYNCYAKE LGFAIRVKSS  180
WTKRNSKEKR GAVLCCNCEG FKTMKEASTR RKETRRGCLA MIRLRLVDSN RWRVDEVKLE  240
HNHPFDPERA QNCKSHKKMD SVAKRKLEPA VGVEVRTIKL YRSPTVDTLN YGSSNERDFG  300
NCIDASKCLK VNKGDFQLIC NFFSRMQLTN PNFFYIMDLN DEGNVRNVFW IDSRSRTSYS  360
YFGDVVLVDT TCLSKSYEIP LVVFFGVNHH GEALLLGCGL LVDESFETYI WVLRAWLTCM  420
SGRPPPTIIT DRCKALQNAV SEVFPRAHHC LCLSLVMQSI AETLGELEQP ELFYTVLNRV  480
VYNSLKVDEF EIAWEEMVQH FGISSHEWLQ KLYEDRERWA PVYLKDTFFA GMSVSQPGVS  540
TSHFFEGFVH KETNLKEFFD IYELILQRKH QKEALDDLES KEFNPVLRTR SNYELRLSEM  600
YTKEIFLSFQ VEVELMSTCF SVSQIHTNAP VITYMIKEQD TAGDTRDARN YEVMYDRVGQ  660
DVRCMCSCFN FKGYLCRHAL CVLDHNGVEE IPNQYILSRW RKDFKRLYSP DLGSNNIDIS  720
NPVQWFDHLY RRALQVVEEG MASQDHYMVA WQAFQESLNK VRLVADRHG

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019169944.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 8-like isoform X1
Swissprot	Q9S793	0.0	FRS8_ARATH; Protein FAR1-RELATED SEQUENCE 8
TrEMBL	A0A2R6QZL7	0.0	A0A2R6QZL7_ACTCH; Protein FAR1-RELATED SEQUENCE like
STRING	XP_009631083.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1347	19	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80010.1	0.0	FAR1-related sequence 8

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]