PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc001380.1_g00013.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | NAC | ||||||||
Protein Properties | Length: 336aa MW: 37745.8 Da PI: 8.3927 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 88.6 | 1.1e-27 | 62 | 245 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpk............................. 49 lp+G++F+P+d+e++ e+L++kv+ ++ ++++ + ++ +i++++P++Lp Itr_sc001380.1_g00013.1 62 LPAGVKFDPSDQEIL-EHLEAKVSLDShklhplIDEFIHtLEGEdGICYTHPEKLPDtgliqpfhnvkvtfnvlsflwapdtvlvl 146 799***********9.99****999985554432222222444435**********5589************************** PP NAM 50 .............kvkaeekewyfFskrdkkyatgkrknratk......sgyWkatgkdkevlskkgelvglkktLvfy..kgrap 114 v+++ +fF++ +k+y+tg+rk+r+++ + +W++tgk+++v + kg ++g kk+Lv+y g+++ Itr_sc001380.1_g00013.1 147 spkdwpilsnqdvGVTKDGLVRHFFHRPSKAYTTGTRKRRKVHtdvdgnETRWHKTGKTRPVAA-KGMVKGYKKILVLYtnYGKQR 231 **99999887754333334466******************744445555888***********9.999***********6657999 PP NAM 115 kgektdWvmheyrl 128 k+ekt+Wvmh+y+l Itr_sc001380.1_g00013.1 232 KPEKTNWVMHQYHL 245 999*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.11E-8 | 57 | 119 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 27.59 | 62 | 264 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.3E-14 | 63 | 245 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.28E-23 | 162 | 264 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 336 aa Download sequence Send to blast |
MTCSSDSGED RPARLFAQNS GGKNNSVTIN EITRHSGMRA CPSCGHPIKC EQKAGIHNLP 60 GLPAGVKFDP SDQEILEHLE AKVSLDSHKL HPLIDEFIHT LEGEDGICYT HPEKLPDTGL 120 IQPFHNVKVT FNVLSFLWAP DTVLVLSPKD WPILSNQDVG VTKDGLVRHF FHRPSKAYTT 180 GTRKRRKVHT DVDGNETRWH KTGKTRPVAA KGMVKGYKKI LVLYTNYGKQ RKPEKTNWVM 240 HQYHLGDDED EKEGELVVSK VFFQTQPRQC GSLLRDSPPL DLPQAGRKAG SHLRESAATM 300 VESFNPTLIS FDQFDHNRPA SRLLPSFNMH DTSFIP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019193007.1 | 0.0 | PREDICTED: NAC domain-containing protein 73-like | ||||
Swissprot | O49459 | 1e-105 | NAC73_ARATH; NAC domain-containing protein 73 | ||||
TrEMBL | A0A2Z5HVI9 | 0.0 | A0A2Z5HVI9_IPOBA; NAC8 protein | ||||
STRING | XP_009587632.1 | 1e-131 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2875 | 24 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28500.1 | 1e-101 | NAC domain containing protein 73 |
Publications ? help Back to Top | |||
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