PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001380.1_g00005.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 440aa    MW: 47933.3 Da    PI: 9.4664
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001380.1_g00005.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.83.9e-05828323
                             ETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                             C++Cgk F r  nL+ H r H
  Itr_sc001380.1_g00005.1  8 CEICGKGFQRDQNLQLHRRGH 28
                             *******************88 PP
2zf-C2H213.60.000282104123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              +kC++C+k++  +s+ k H +t+
  Itr_sc001380.1_g00005.1  82 WKCEKCSKRYAVQSDWKAHSKTC 104
                              58*****************9998 PP
3zf-C2H2120.00064112130523
                              TTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                              dCg++Fsrk+++ +H   +
  Itr_sc001380.1_g00005.1 112 DCGTVFSRKDSFITHRAFC 130
                              8**************8765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.603.7E-5528IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.35E-6528No hitNo description
SMARTSM003550.076628IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.489628IPR007087Zinc finger, C2H2
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.9E-570103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.35E-677102No hitNo description
SMARTSM0035513082102IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MATNRFLCEI CGKGFQRDQN LQLHRRGHNL PWKLKQRSSK EVRKRVYVCP EKSCVHHHPS  60
RALGDLTGIK KHYCRKHGEK KWKCEKCSKR YAVQSDWKAH SKTCGTREYR CDCGTVFSRK  120
DSFITHRAFC DALAEETARV TAASNMQNAA AVAALGSNIN YHFIGAAAPA IGPGMAAPPH  180
FGSIFKPTII GNDENMNPVR QGQLPLWMAA APGQTTTSSQ GQEFQSFVGS ENPMVTTPLS  240
SSGSFQLNWN SLVGNNKIST TSNSNSTNNN NGEEMDGNHH QSQVMSVPIP SLFSTQHRPH  300
HHHHQSPSAN MSATALLQKA AQIGATTSDP AFLGSLGLQV NNNNNNNNNN SNSNNQVVVV  360
QDNNNGNDNK FSGLYSATSI SMVSSHLGSE MESHAQMYPS KRRHIQQNEG GGGGGGGQTR  420
DFLGVGVQSI CHPSSINGWI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C5e-3678145370Zinc finger protein JACKDAW
5b3h_F5e-3678145370Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that regulates tissue boundaries and asymmetric cell division (PubMed:17785527, PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:17785527, PubMed:25829440). Interacts with the SCR and MGP promoters (PubMed:21935722). Does not show transcription activity by itself, but regulates the transcription of downstream genes through interaction with other transcription factors (PubMed:21935722). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). Positively involved in gibberellic acid (GA) signaling (PubMed:24821766). {ECO:0000269|PubMed:17785527, ECO:0000269|PubMed:21935722, ECO:0000269|PubMed:24821766, ECO:0000269|PubMed:25829440}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00125DAPTransfer from AT1G03840Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by the transcription factor JKD, and down-regulated by SHR, SCR and itself. {ECO:0000269|PubMed:21935722}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019193578.10.0PREDICTED: zinc finger protein NUTCRACKER-like isoform X2
SwissprotQ9ZWA61e-135IDD3_ARATH; Zinc finger protein MAGPIE
TrEMBLA0A061E4I01e-172A0A061E4I0_THECC; C2H2 and C2HC zinc fingers superfamily protein
TrEMBLA0A1R3G0021e-172A0A1R3G002_9ROSI; Uncharacterized protein
STRINGEOX995371e-173(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44160.11e-114C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Muñoz-Strale D,León G
    Identification of two highly specific pollen promoters using transcriptomic data.
    Plant Physiol. Biochem., 2014. 83: p. 292-9
    [PMID:25208507]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]