PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001352.1_g00006.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 275aa    MW: 31050.8 Da    PI: 7.3117
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001352.1_g00006.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2574.9e-182878155
                      AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                             +++ GVr+++ +grWvAeI+d       +  r +lg++ taeeAa+a+++a+  l+g
  Itr_sc001352.1_g00006.1 28 KKFVGVRQRP-SGRWVAEIKDtT-----HkIRKWLGTYATAEEAARAYDQAACLLRG 78
                             589*******.7*********33.....25**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.32E-292885No hitNo description
SMARTSM003806.4E-342992IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-262986IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-192987IPR016177DNA-binding domain
PfamPF008475.2E-132978IPR001471AP2/ERF domain
PROSITE profilePS5103218.942986IPR001471AP2/ERF domain
PRINTSPR003671.8E-63041IPR001471AP2/ERF domain
PRINTSPR003671.8E-65268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MENIHAQQHH KEVIKPQERR QSDNNLNKKF VGVRQRPSGR WVAEIKDTTH KIRKWLGTYA  60
TAEEAARAYD QAACLLRGSN TRTNFVTRVP ADSPLAARIR NLILNSKNCS KLRPQPKSSS  120
NTNVLPSIVT RRNNSDEDSV SNGKIPDTDK DSFSYDVQAQ FDVATYKADD LQRCSYELQK  180
GSSSSSSCSS CTLWSFEKSI EFGEELIEFP KTSTVGEMGI SEFERMRVEE YMQAIKDADA  240
NGEFIAAIIN GPICCNWDPY VAKPLACKEV FSWFD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019156749.14e-91PREDICTED: ethylene-responsive transcription factor ERF113-like
TrEMBLA0A1S4C1N67e-51A0A1S4C1N6_TOBAC; ethylene-responsive transcription factor RAP2-11-like
TrEMBLA0A314L5121e-50A0A314L512_NICAT; Ethylene-responsive transcription factor rap2-11
STRINGXP_009757570.11e-50(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20182261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.12e-25related to AP2 11