PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc001340.1_g00004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | MYB | ||||||||
Protein Properties | Length: 217aa MW: 25009.2 Da PI: 10.184 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45.9 | 1.3e-14 | 6 | 53 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+++Ed +l+ +++++G +W+ ++ g+ Rt+k+c++rw +yl Itr_sc001340.1_g00004.1 6 KGAWSPQEDRRLISYINKYGIWNWSQMPKFAGLARTGKSCRLRWINYL 53 79******************99************************97 PP | |||||||
2 | Myb_DNA-binding | 38.2 | 3.4e-12 | 59 | 104 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ eE e +v+ lG++ W++ a+ ++ gRt++++k++++++l Itr_sc001340.1_g00004.1 59 RGPFSVEEVEVIVRMYLSLGNR-WSAMAAQLP-GRTDNDIKNFYHTHL 104 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 24.218 | 1 | 57 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.35E-27 | 3 | 100 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.9E-11 | 5 | 55 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.9E-13 | 6 | 53 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.7E-22 | 7 | 60 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.92E-10 | 8 | 53 | No hit | No description |
PROSITE profile | PS51294 | 15.172 | 58 | 108 | IPR017930 | Myb domain |
SMART | SM00717 | 1.3E-11 | 58 | 106 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.8E-10 | 59 | 104 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-22 | 61 | 108 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.69E-7 | 61 | 104 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MVNLKKGAWS PQEDRRLISY INKYGIWNWS QMPKFAGLAR TGKSCRLRWI NYLRPDVKRG 60 PFSVEEVEVI VRMYLSLGNR WSAMAAQLPG RTDNDIKNFY HTHLKKNLEA VSVPVSRRAA 120 AAAENGRKRT NKSKNNDNAP PPVMVQKHTQ VVAEKPRHDD DHVVLMNSSP GGFGNPNVAH 180 REQEVHRRFS SLSSEDDYDE DRSFWYNVLK EADDLKF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 3e-24 | 4 | 108 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator involved in cold stress response (PubMed:14675437, PubMed:20807373, PubMed:22246661). Regulates positively the expression of genes involved in reactive oxygen species (ROS) scavenging such as peroxidase and superoxide dismutase during cold stress. Transactivates a complex gene network that have major effects on stress tolerance and panicle development (PubMed:20807373). {ECO:0000269|PubMed:14675437, ECO:0000269|PubMed:20807373, ECO:0000269|PubMed:22246661}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cold stress. {ECO:0000269|PubMed:14675437, ECO:0000269|PubMed:20807373, ECO:0000269|Ref.2}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019200272.1 | 1e-116 | PREDICTED: myb-related protein Myb4-like | ||||
Swissprot | Q7XBH4 | 3e-46 | MYB4_ORYSJ; Transcription factor MYB4 | ||||
TrEMBL | A0A3Q7GR98 | 4e-60 | A0A3Q7GR98_SOLLC; Uncharacterized protein | ||||
STRING | Solyc06g034000.1.1 | 6e-61 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31180.1 | 5e-47 | myb domain protein 14 |
Publications ? help Back to Top | |||
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