PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001337.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB
Protein Properties Length: 518aa    MW: 56373.5 Da    PI: 7.9888
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001337.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.36.4e-173885148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             rg+WT+eEd+ll d++++ G g+W+t ++  g+ R++k+c++rw +yl
  Itr_sc001337.1_g00001.1 38 RGPWTPEEDKLLTDYINKEGEGRWRTLPKSAGLLRCGKSCRLRWMNYL 85
                             89******************************99************97 PP
2Myb_DNA-binding50.16.5e-1691136148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                              rg  T++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l
  Itr_sc001337.1_g00001.1  91 RGHITPDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 136
                              6778******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.9793385IPR017930Myb domain
SuperFamilySSF466892.28E-2935132IPR009057Homeodomain-like
SMARTSM007175.8E-133787IPR001005SANT/Myb domain
PfamPF002499.0E-153885IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.3E-223992IPR009057Homeodomain-like
CDDcd001671.66E-104085No hitNo description
PROSITE profilePS5129424.65386140IPR017930Myb domain
SMARTSM007172.7E-1590138IPR001005SANT/Myb domain
PfamPF002491.1E-1491136IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-2493141IPR009057Homeodomain-like
CDDcd001674.11E-1295136No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010090Biological Processtrichome morphogenesis
GO:0010468Biological Processregulation of gene expression
GO:0048354Biological Processmucilage biosynthetic process involved in seed coat development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 518 aa     Download sequence    Send to blast
MRTQSSSSAK GAAGASPASK AKGKGKTTPC CSKVGLKRGP WTPEEDKLLT DYINKEGEGR  60
WRTLPKSAGL LRCGKSCRLR WMNYLRPTVK RGHITPDEED LILRLHRLLG NRWSLIAGRI  120
PGRTDNEIKN YWNTHLTKKL ISQGIDPRNH KPLLVNPTNN PKNHTSSSYS APVIKPTPIH  180
VGLSNQDKTV KINSSVNVGG TTNHQIDQPN SVGGTTNQTT GNGDEDFNMD GGGIISCCIG  240
EDNEDNVGMD FCPDEDVFST FFDSLMNHDV FFAASQNNQQ PNHDITPLQP STSEHNNNNN  300
NNNQPLNPLQ QMNFPFSTAG WVDGDAGSII IIIIIIIVVV VVVVVAAAAA ANVVAAAKYS  360
FEPYSYTFRE SDSSTGGDPK SNRSTWAWPS WVRPGPTSLG LVWPSPELDH LGRVLSSAKA  420
QADLVVGSPH QLSPVLGRRS LPRFGAVFSA LNAVQVVLNG YCNCVERELQ LRGTEIVSSV  480
SNYSCVELIL QLYSTDTTAV MLKGYCSCVE RINNLCSA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C7e-263614025128MYB TRANSFORMING PROTEIN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019151897.10.0PREDICTED: transcription repressor MYB5-like
STRINGXP_009607844.11e-90(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.11e-78myb domain protein 5