PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001321.1_g00006.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 292aa    MW: 31713 Da    PI: 7.6399
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001321.1_g00006.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.97.7e-21147196255
                      AP2   2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                              +y+GVr+++ +g+W+AeIrd +     r +r++lg+f+tae Aa+a+++a+++++g
  Itr_sc001321.1_g00006.1 147 RYRGVRQRP-WGKWAAEIRDpF-----RaTRVWLGTFDTAEAAARAYDEAALRFRG 196
                              7********.**********66.....68************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541718.5E-23147205IPR016177DNA-binding domain
PROSITE profilePS5103225.686147204IPR001471AP2/ERF domain
SMARTSM003805.0E-37147210IPR001471AP2/ERF domain
PfamPF008471.4E-14147196IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.4E-33147205IPR001471AP2/ERF domain
PRINTSPR003674.2E-12148159IPR001471AP2/ERF domain
CDDcd000186.85E-16155206No hitNo description
PRINTSPR003674.2E-12170186IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MCIGKVANPR DRTRGGSRGS EDPDDVMRLE SLVSPMFSGL DREHEMSVMV SALTDVVAGR  60
RPHPTAGENW EPEEHRQFLE SSSVDTVCSS YHNFSIANTA TAAGGYTGGE CSASAIIRSS  120
EAASFVYTPP ANSTGRGGDN NAGERRRYRG VRQRPWGKWA AEIRDPFRAT RVWLGTFDTA  180
EAAARAYDEA ALRFRGSKAK LNFPENVRLL LPPIPNPLQN PPIPSSSSQP LQTHNHFINQ  240
PPSFLQQLML SSSSSSSSSS SMPYAHYQPQ PPVGTQSTSC SDSAYHHPSS SG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-22146207163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019179538.11e-101PREDICTED: ethylene-responsive transcription factor ERF110-like
TrEMBLA0A2P5BG716e-46A0A2P5BG71_PARAD; AP2/ERF transcription factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64750.16e-15ERF family protein