PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001319.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 337aa    MW: 37023.9 Da    PI: 5.6639
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001319.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.31.1e-19125174255
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                              +y+GVr+++ +g+W+AeIrdp     r  r +lg+++taeeAa  +++a+ +l+g
  Itr_sc001319.1_g00001.1 125 KYRGVRQRP-WGKWAAEIRDPL----RrVRLWLGTYDTAEEAAMVYDHAAIRLRG 174
                              8********.**********72....45*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.0E-30124182IPR001471AP2/ERF domain
SMARTSM003802.3E-37125188IPR001471AP2/ERF domain
SuperFamilySSF541714.25E-22125183IPR016177DNA-binding domain
PfamPF008471.3E-12125174IPR001471AP2/ERF domain
PROSITE profilePS5103224.197125182IPR001471AP2/ERF domain
CDDcd000181.65E-31125181No hitNo description
PRINTSPR003671.1E-10126137IPR001471AP2/ERF domain
PRINTSPR003671.1E-10148164IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048364Biological Processroot development
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MEKQQAMLSS SVKFSEHRQQ VSLPSGRRNL PEFWPRVVRI SVTDGDATDS SDEDEEKACF  60
GRRRVKRYVT ELRIQPCGRG DGNGNSDGVL RTEGTAAAKR RKKSGAESAA AAANGRLKAG  120
NNARKYRGVR QRPWGKWAAE IRDPLRRVRL WLGTYDTAEE AAMVYDHAAI RLRGPDALTN  180
FSVPTTAPPP ALADVKPEPA DSGYNSGDDS HHQLSPKSVL RFASSASNGD SHSPHQAEAE  240
AVKMSHSPSS PENLSTFSSP FDTLFPNDLF QFEDPLPVPV PGLFDEMGLC NYIFEEACSD  300
TFIGSSHEFG LEQSTWPADN YFQEFGDIFG SDPLVAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-19124181462ATERF1
3gcc_A2e-19124181462ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00027PBMTransfer from AT4G23750Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019168728.10.0PREDICTED: ethylene-responsive transcription factor CRF2-like isoform X2
TrEMBLA0A1J6KL081e-120A0A1J6KL08_NICAT; Ethylene-responsive transcription factor crf2
STRINGXP_009763317.11e-117(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49423126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23750.22e-55cytokinin response factor 2