PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001308.1_g00021.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family SBP
Protein Properties Length: 1024aa    MW: 113684 Da    PI: 5.723
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001308.1_g00021.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP1339.9e-42157234178
                              --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                      SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                              +Cqve+C adls+ak+yhrrhkvCe+hska+++lv +++qrfCqqCsrfh+l+efD++krsCrrrLa+hn+rrrk+q+
  Itr_sc001308.1_g00021.1 157 VCQVEDCGADLSKAKDYHRRHKVCEMHSKATKALVGNIMQRFCQQCSRFHALQEFDDGKRSCRRRLAGHNKRRRKTQP 234
                              6**************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.106.8E-34151219IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.983155232IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.44E-38156238IPR004333Transcription factor, SBP-box
PfamPF031104.7E-30158231IPR004333Transcription factor, SBP-box
SuperFamilySSF484034.73E-9796912IPR020683Ankyrin repeat-containing domain
CDDcd002043.11E-8800911No hitNo description
Gene3DG3DSA:1.25.40.201.2E-6800912IPR020683Ankyrin repeat-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1024 aa     Download sequence    Send to blast
MEARIGGQAQ LFYDLGAADL RAVGKRSLEW DPSDWKWDGH LFLARPLNPN PSSNYQSRQF  60
FPLETGISTA VVSSTSNSSS SCSDEVNIGS EKETRELEKR QRVIVVEEDN LEGGETGTLT  120
LKLGERGFPS NERELQTMDG NIGKKIKLSG PTSNRAVCQV EDCGADLSKA KDYHRRHKVC  180
EMHSKATKAL VGNIMQRFCQ QCSRFHALQE FDDGKRSCRR RLAGHNKRRR KTQPDTISNS  240
NTMNDSQASG YLLMSLLKIL ANMHSNRGNS TEDQDLLSHL LKSLASQGAL SGDKSISGIL  300
HESSNLLNNG PAFRDSDMIS ALISNGSQAP SRPKEQPCTA SASKMPTKGL DVHDVGVEDM  360
RASSSQRPVN MFSVESSSLV TAPGQESSAG RNKLITFDLN DMYVDSDDGM EDVERLPVPA  420
DVVTGSLECP SWVQKDSHQS SPPQASGHSD SGSAQSPSSS NGDPQSRTDR IVFKLFGKDP  480
SEFPFLLRAQ ILDWLSHSPT DIESYIRPGC VILTIYLRLP ESAWEELCCS LNSSLSRLLD  540
APDNDSFWRN GWIYVRVQNQ IALLCSGKVL VETSLPFNSY EYSTIVSVKP IAVPVSERSQ  600
FTVKGFNLST PLARLHCALE GNYLVPEASI EESEHSNELE EHHEIQSVNF TCSFPEAAGR  660
GFIEVEDHDG LSSSFFPFIV AEEDVCSEIR TLENEIELSQ KDYIDGQIDK METRNQAMDF  720
LHEMGWLLQR NNLKSRMSKL DASASCCFPL KRFAWLMEFS IDHNWCAVVK KLLDIFFNGS  780
VGTGEQSSSL KLLFSEMGLL HKAVRRNSRP LVELLLRYSP DRVADELRLE YEEALGGCDG  840
GFLFRPNILG PSGLTPLHVA AGIDGSEDVI DALTDDPGKV AIEAWKNARD STGFTPEDYA  900
RLRGHYSYIH LVQRKLNRKV STEHVVVDIR SAVGDGTYKL KQNDGGSMSF EVSRSRSREV  960
GCRVCDQKMG YVMRGRSLLY KPAMLSMVAI AAVCVCVALL FKSSPEVLYV FQPFRWEMLD  1020
YGSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-30149231284squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000269|PubMed:16554053}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00633PBMTransfer from PK06791.1Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019163336.10.0PREDICTED: squamosa promoter-binding-like protein 12
SwissprotQ9S7P50.0SPL12_ARATH; Squamosa promoter-binding-like protein 12
TrEMBLA0A328D9680.0A0A328D968_9ASTE; Uncharacterized protein
TrEMBLA0A484K9I40.0A0A484K9I4_9ASTE; Uncharacterized protein
STRINGXP_009796558.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18712466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47070.10.0squamosa promoter binding protein-like 1
Publications ? help Back to Top
  1. Jung S, et al.
    Synteny conservation between the Prunus genome and both the present and ancestral Arabidopsis genomes.
    BMC Genomics, 2006. 7: p. 81
    [PMID:16615871]
  2. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  3. Chao LM, et al.
    Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage.
    Mol Plant, 2017. 10(5): p. 735-748
    [PMID:28400323]