PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc001296.1_g00009.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 231aa MW: 26635.1 Da PI: 8.8827 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 54.3 | 2.2e-17 | 31 | 82 | 5 | 56 |
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +f++eq++ Le+ F+ + ++ ++++ + A+ lgL+ rqV +WFqN+Ra++k Itr_sc001296.1_g00009.1 31 KRFSNEQVKSLETIFKLETKLETKKKLQVARDLGLQPRQVAIWFQNKRARWK 82 58*************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 111.2 | 7.1e-36 | 30 | 117 | 3 | 90 |
HD-ZIP_I/II 3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 +r+s+eqvk+LE+ F+ e+kLe+++K ++ar+Lglqprqva+WFqn+RAR+k+kq+E++y++Lk+++d+l+ + ++L+ke+e+L Itr_sc001296.1_g00009.1 30 SKRFSNEQVKSLETIFKLETKLETKKKLQVARDLGLQPRQVAIWFQNKRARWKSKQIEEEYRVLKAKFDNLNVQFDSLKKEKESLL 115 69*********************************************************************************997 PP HD-ZIP_I/II 89 ee 90 + Itr_sc001296.1_g00009.1 116 MQ 117 55 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.59E-17 | 16 | 85 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.8E-17 | 18 | 83 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 8.2E-14 | 24 | 88 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 16.892 | 24 | 84 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 8.0E-15 | 31 | 82 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.24E-11 | 32 | 85 | No hit | No description |
PRINTS | PR00031 | 6.8E-5 | 55 | 64 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 59 | 82 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 6.8E-5 | 64 | 80 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 2.5E-11 | 84 | 125 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009738 | Biological Process | abscisic acid-activated signaling pathway | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MEEEEEHQAL ENHESVGCQK GSKKKKSKNS KRFSNEQVKS LETIFKLETK LETKKKLQVA 60 RDLGLQPRQV AIWFQNKRAR WKSKQIEEEY RVLKAKFDNL NVQFDSLKKE KESLLMQSEK 120 LRSELEKGCA GQKKRQETKD MEMPSGSNNK VTNYESKEST VNGGRSIVRV EEDVEKDKAL 180 LAEKLKQKEE AEFLNLGELG GSPLASPEQW CSGSLNIPFD QSCGTSKWWD F |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00320 | DAP | Transfer from AT2G46680 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019189091.1 | 1e-127 | PREDICTED: homeobox-leucine zipper protein ATHB-12-like | ||||
TrEMBL | A0A1J6KVH9 | 8e-68 | A0A1J6KVH9_NICAT; Homeobox-leucine zipper protein athb-12 | ||||
STRING | XP_009611805.1 | 4e-67 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2041 | 23 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46680.1 | 3e-29 | homeobox 7 |