PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc001294.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | MYB | ||||||||
Protein Properties | Length: 271aa MW: 30716.3 Da PI: 6.2383 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24.3 | 7e-08 | 1 | 39 | 10 | 48 |
HHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 10 ellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 ++l + + + G g+W++++ g+ R +k+c++rw +yl Itr_sc001294.1_g00001.1 1 QKLRNHILKNGHGCWSSVPINAGLQRNGKSCRLRWINYL 39 578899999****************************97 PP | |||||||
2 | Myb_DNA-binding | 49.3 | 1.1e-15 | 45 | 90 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg ++ +E+e ++ ++ lG++ W+ Ia++++ gRt++++k++w++yl Itr_sc001294.1_g00001.1 45 RGTFSLQEEETILALHGILGNK-WSQIAQHLP-GRTDNEIKNFWHSYL 90 899*******************.*********.************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00167 | 5.96E-4 | 1 | 39 | No hit | No description |
Pfam | PF00249 | 5.5E-6 | 1 | 39 | IPR001005 | SANT/Myb domain |
SMART | SM00717 | 13 | 1 | 41 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-13 | 1 | 46 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 10.792 | 1 | 39 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.7E-21 | 25 | 96 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 25.123 | 40 | 94 | IPR017930 | Myb domain |
SMART | SM00717 | 1.1E-14 | 44 | 92 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.7E-14 | 45 | 90 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.63E-10 | 47 | 90 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-24 | 47 | 94 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 271 aa Download sequence Send to blast |
QKLRNHILKN GHGCWSSVPI NAGLQRNGKS CRLRWINYLR PGLKRGTFSL QEEETILALH 60 GILGNKWSQI AQHLPGRTDN EIKNFWHSYL KKKVAKMAEA ERSMENGECS IHSVKSTSQS 120 SGLESFGQIE GSLADTDESI PNNLDFPKTA QKSNLPKVLF AEWLSLDQFN NGQDFQTANH 180 AVLPRNNFGY NGSELQDPFI HGFMLNEDTY GHGIQPVLNN GTVDDLFQPE LKFEDQITVS 240 GFAEFFSGGF NVSSNDLMYD ELYLRRNFRE E |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-18 | 26 | 94 | 40 | 108 | B-MYB |
1h8a_C | 5e-18 | 1 | 94 | 36 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019194995.1 | 0.0 | PREDICTED: transcription factor LAF1-like | ||||
TrEMBL | A0A1U8G9M0 | 1e-112 | A0A1U8G9M0_CAPAN; Transcription factor MYB46 | ||||
TrEMBL | A0A2G2Z0U6 | 1e-112 | A0A2G2Z0U6_CAPAN; transcription factor LAF1-like | ||||
TrEMBL | A0A2G3CW61 | 1e-112 | A0A2G3CW61_CAPCH; Transcription factor MYB46 | ||||
STRING | XP_009629823.1 | 1e-115 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25560.1 | 2e-49 | myb domain protein 18 |