PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc001286.1_g00007.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

G2-like

Protein Properties

Length: 366aa MW: 42293.2 Da PI: 7.5278

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc001286.1_g00007.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	95.2	5.1e-30	27	81	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr +Wt + HerFv+av+qLGG+ kAtPk+i++lm+++ +t +h+kSHLQkYRl Itr_sc001286.1_g00007.1 27 KPRFKWTVQVHERFVDAVNQLGGIYKATPKNIMRLMDIEQITTDHIKSHLQKYRL 81 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.76E-16	25	82	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	6.8E-28	26	84	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.6E-22	27	81	IPR006447	Myb domain, plants

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence Send to blast
MSTPGRNETK NEKNGQEVKQ ALSGVRKPRF KWTVQVHERF VDAVNQLGGI YKATPKNIMR 60 LMDIEQITTD HIKSHLQKYR LNGSKQANTN TRKSKCFYEF FCDKSNSIST TSRTQVQHNT 120 WITYNGVSDV PEISTERQTT SQAKLEQFER AQQQVQYIER DCHGTLEQTS NNEERQYPQV 180 EEMELTTEQL DEQREMAQKD HISIMNSYPL SSPMESTNYI KPDYVGTTYS TLEIERKNFL 240 KPPYKRWLEA NKENGKFPYT SARTDDRELI IPEKKRFDAA PLKISLQMEK GSTSSGFSAD 300 ETHKRGKCYQ VYASPTSAAQ IEAQNMIAED NKTNICNFPG YKDFKAMNAS NEKSFDLNMP 360 AKEQEE

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence Send to blast

MSTPGRNETK NEKNGQEVKQ ALSGVRKPRF KWTVQVHERF VDAVNQLGGI YKATPKNIMR  60
LMDIEQITTD HIKSHLQKYR LNGSKQANTN TRKSKCFYEF FCDKSNSIST TSRTQVQHNT  120
WITYNGVSDV PEISTERQTT SQAKLEQFER AQQQVQYIER DCHGTLEQTS NNEERQYPQV  180
EEMELTTEQL DEQREMAQKD HISIMNSYPL SSPMESTNYI KPDYVGTTYS TLEIERKNFL  240
KPPYKRWLEA NKENGKFPYT SARTDDRELI IPEKKRFDAA PLKISLQMEK GSTSSGFSAD  300
ETHKRGKCYQ VYASPTSAAQ IEAQNMIAED NKTNICNFPG YKDFKAMNAS NEKSFDLNMP  360
AKEQEE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-14	27	80	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-14	27	80	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-14	27	80	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-14	27	80	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-14	27	80	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-14	27	80	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-14	27	80	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-14	27	80	2	55	Protein PHOSPHATE STARVATION RESPONSE 1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019152010.1	0.0	PREDICTED: protein PHOSPHATE STARVATION RESPONSE 1-like isoform X6

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12062	16	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24120.1	2e-23	G2-like family protein