PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001266.1_g00002.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family FAR1
Protein Properties Length: 646aa    MW: 73175 Da    PI: 8.7915
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001266.1_g00002.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR127.69.6e-092322893490
                     FAR1  34 vCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                              vC  + +++e +    + ++r+r ++r+gC+a++  +  ++g+++++ +e+ HnH+l+
  Itr_sc001266.1_g00002.1 232 VCMDSSSAAELDGVeCSVRKRRRFSNRVGCRARIAFRYASNGTYCIHLFEERHNHSLS 289
                              555555544443332456788999********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM002131.9E-431104IPR000626Ubiquitin domain
Gene3DG3DSA:3.10.20.903.1E-184691No hitNo description
PROSITE profilePS5005314.8834690IPR000626Ubiquitin domain
SuperFamilySSF542364.37E-125491IPR029071Ubiquitin-related domain
PfamPF002404.0E-125990IPR000626Ubiquitin domain
PRINTSPR003489.7E-145979IPR019956Ubiquitin
PRINTSPR003489.7E-1480101IPR019956Ubiquitin
PfamPF031011.0E-5231289IPR004330FAR1 DNA binding domain
PfamPF105515.0E-9372415IPR018289MULE transposase domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 646 aa     Download sequence    Send to blast
MYSSSSRRFH TPAVSLYREI PVRSLSLCLS VCIPEKLHGW FFHQVVKASM QQFFRWFKDK  60
EGIPPDQQRL IFAGKQLEDG RTLADYNIQK SPPCTLFSVS VVVSKEPNAL LFECCLFGLC  120
LCLLSAKAIE LVHQGDRRNM MRNSRNVGAG SNEITILDQL SSNVSSCSGF FVSGRRRPNS  180
SLPNSSLNYK YEFVDRARVI VLDSVKPVVG KVFPDLDFAV EFYIKEGFKN VVCMDSSSAA  240
ELDGVECSVR KRRRFSNRVG CRARIAFRYA SNGTYCIHLF EERHNHSLSS LLSRQFLKGN  300
RKIGVGHMKF VADCAKANIG LVQSFRLFKE MVKKEVCPAL FFAFDVDEFD QLSRVFWADA  360
ISRKNFTLFG DVVSFDATYQ TNRYDMVFTP FTGVNNHKKC ITFGAGLLTK EDIESCVVGD  420
MVGPSLSRNE SFRAKLNSVV WNQMLEPTEF DHQWNLVMEK FGLVEHNWFV KLFDIHLKTP  480
LAMEKHAAYV YTVAIFYEVQ YEICAACFTC RVVNVREDQG FLYYEIKDGD NRVFSVMHNV  540
VELSGGLRMH LWVRVLILMV LLLINGKIIK EHKDMLLSYP GCCSSVVGKR SIIEAICGSF  600
VPSEVSVLPP KKAKNKGSDM EGVLALIGGK KALLVPQSLS HLKCYP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ud7_A2e-1549902263PROTEIN (UBIQUITIN CORE MUTANT 1D7)
2jwz_A3e-1558993170Ubiquitin
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1249253RKRRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019178827.11e-116PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA3136228
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.16e-18FAR1-related sequence 5