PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001264.1_g00006.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ARF
Protein Properties Length: 996aa    MW: 110419 Da    PI: 6.9679
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001264.1_g00006.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.51.2e-18206325199
                              EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE....................EEETTEEEE- CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliy..................rkksgryvlt 62 
                              f+k+lt sd++++g +++p++ ae+       +++++  ++l+ +d++ ++W++++i+                   ++++r++lt
  Itr_sc001264.1_g00006.1 206 FCKTLTASDTSTHGGFSVPRRAAEKVfpqldySLQPPA-QELIARDLHENEWKFRHIFraiflpqhnyansigtmfIGQPKRHLLT 290
                              99***********************9*****9777766.49***************9999*****99999888888888889**** PP

                              TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                       B3  63 kGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                              +GW+ Fv+a++L +gD+v+F   ++++ +l+++++r+
  Itr_sc001264.1_g00006.1 291 TGWSVFVSAKRLVAGDSVIFI--WNEKNQLLLGIRRA 325
                              *********************..8899999****997 PP
2Auxin_resp119.13.6e-39350433183
               Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                              aahaa+t+s F+++YnPras+seFvv+++k++ka++ +++svGmRf+m fete+ss rr++Gt++g+sdldp rWpnS+Wrs+k
  Itr_sc001264.1_g00006.1 350 AAHAAATNSRFTIFYNPRASPSEFVVPLAKYVKAVYhTRISVGMRFRMLFETEESSVRRYMGTITGISDLDPPRWPNSHWRSVK 433
                              79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.96E-43191353IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.5E-38199339IPR015300DNA-binding pseudobarrel domain
CDDcd100172.71E-17205324No hitNo description
SMARTSM010197.2E-14206326IPR003340B3 DNA binding domain
PROSITE profilePS5086311.152206326IPR003340B3 DNA binding domain
PfamPF023624.2E-16206325IPR003340B3 DNA binding domain
PfamPF065071.3E-34350433IPR010525Auxin response factor
SuperFamilySSF542772.68E-7854938No hitNo description
PfamPF023095.8E-7860952IPR033389AUX/IAA domain
PROSITE profilePS5174523.373863947IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 996 aa     Download sequence    Send to blast
MKLSSPGFNQ QSPPEGEKKC LNSELWHACA GPLVSLPAVG SRVVYFPQGH SEQEGHSSYQ  60
FTRKISWLVR FPESGCVRIK RLSLRQKLEL VAKSQLYFLI DRHHIFETLG AGLGLLSPLL  120
ASTQQSPSHW VAASTNREVD AHIPNYPSLP PQLICQLHNV TMHADLETDE VYAQMTLQPL  180
SPQEQKEASF LPMDLGTPSK QPTNYFCKTL TASDTSTHGG FSVPRRAAEK VFPQLDYSLQ  240
PPAQELIARD LHENEWKFRH IFRAIFLPQH NYANSIGTMF IGQPKRHLLT TGWSVFVSAK  300
RLVAGDSVIF IWNEKNQLLL GIRRANRPQT VMPSSVISSD SMHLGLLAAA AHAAATNSRF  360
TIFYNPRASP SEFVVPLAKY VKAVYHTRIS VGMRFRMLFE TEESSVRRYM GTITGISDLD  420
PPRWPNSHWR SVKVGWDEST AGDRQPRVSL WEIEPLITFP MYPSPFIRLK RPWPPGLPSF  480
NGMKEEDMMM NSPLLWLRDS GDRGIQSVNY QGIGGVTPWM QPSLPMLGMQ NDVYHAMAAA  540
ALQEMRVVDP SKQNLSSFLQ FQQANGVPHR STTGLMQQPQ MLQQSQPQQP TFLSNLHEAQ  600
PLPPISQPLL QQQLQHQNSF NSIQQQQQRP QQASSQQQAQ CIDQQVSSVG SVMSQLASSS  660
QSQPPSLQTI CSMQPQTFSD STVNPVVNPL QCLLGSVPQY EASHILNASR SSNLMSPTGW  720
PAKRIAVDPV LPSSVTSQCI SSQVDQLGAP NMNISQNAVS LPPFPGSRVC SEDQEGSNDP  780
QNHLLFGVNI DSSSLLMQNG MSSLKGVGSV CDSTTVPFVS SSYMSNSGND FPLNPGMTPP  840
VCVEESSVMQ TSENLGPENP PNKTFVKVYK SGSLGRSLDI TKFSSYHELR SELAQMFGLE  900
GLLEDPLRSG WQLVFVDREN DVLLLGDDPW PEFVNSVWCI KILSPQEVQQ MGKRGLELLS  960
SIPMSQMSNG SCNDFGSPPE SRKMISGMAS VGSLDY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-13412545478388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019190622.10.0PREDICTED: auxin response factor 6
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLA0A2C9UGD00.0A0A2C9UGD0_MANES; Auxin response factor
STRINGcassava4.1_001357m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23682452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]