PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001259.1_g00008.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family Dof
Protein Properties Length: 265aa    MW: 28942.2 Da    PI: 8.4022
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001259.1_g00008.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof128.22.4e-401878363
                   zf-Dof  3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63
                             ++alkcprC+stntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rknk+sss
  Itr_sc001259.1_g00008.1 18 QQALKCPRCESTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSS 78
                             7899*****************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074788.0E-29575IPR003851Zinc finger, Dof-type
PfamPF027015.2E-341975IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.5162175IPR003851Zinc finger, Dof-type
PROSITE patternPS0136102359IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MLGCTKAQQE KKPRPADQQA LKCPRCESTN TKFCYYNNYS LSQPRYFCKS CRRYWTKGGT  60
LRNVPVGGGC RKNKRSSSSA SSASSRSRSQ DQSLCSSPAP LPSLAGLPYE ASDLSLALAR  120
LQKQANLGVG EHEMGMMCNP NNTPYDIVLG NHHHGFLETA ANAPFHNMYY GNINVGGEMG  180
IPYEEHHLGG GGAAAAVKQE MCSAREEGES SRVLWSFPWQ QVGADHQGNN NMGDQIDSSK  240
QNWYGYGNGF GSSSSWHGLL NSPLM
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019167607.11e-136PREDICTED: dof zinc finger protein DOF2.1-like
TrEMBLA0A0B2PDL21e-87A0A0B2PDL2_GLYSO; Dof zinc finger protein DOF2.1
TrEMBLA0A4D6LHY99e-88A0A4D6LHY9_VIGUN; Uncharacterized protein
TrEMBLI1LR011e-87I1LR01_SOYBN; Uncharacterized protein
STRINGGLYMA12G07710.12e-88(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8824419
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60200.12e-40TARGET OF MONOPTEROS 6