PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc001251.1_g00015.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | FAR1 | ||||||||
Protein Properties | Length: 370aa MW: 40920.7 Da PI: 9.5891 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 53.4 | 8.4e-17 | 110 | 208 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.........tekerrtraetrtgCkaklkvkkekdgkwe 77 +fY +Y++ F+vr s++k+ r+ge+ +r +vCs++g + ++ ++k+rr+r+++r++C ak+ ++++++ +++ Itr_sc001251.1_g00015.1 110 EFYLSYGRAGDFDVRHSTMKRD-RDGEVNMRYLVCSRQGAKGGGSSGppiipgdggHVKQRRRRTSNRVECLAKVCLRRDNTREFM 194 6****************99998.9999**************9999889************************************** PP FAR1 78 vtkleleHnHelap 91 vt +e++H+H+l++ Itr_sc001251.1_g00015.1 195 VTIFEEKHTHPLCS 208 ************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.4E-13 | 110 | 207 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 3.2E-8 | 242 | 291 | IPR018289 | MULE transposase domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 370 aa Download sequence Send to blast |
MLLSAYHSIF QSNTTGVRQP QPLPISYGCP PMSRTSPSCH FIKFTTPEDG SQKTKCNTRG 60 GCVAVPSHDG ALGHGSDSAT ADPYYWTPIV EATVRPTIGL RFKTLSEGVE FYLSYGRAGD 120 FDVRHSTMKR DRDGEVNMRY LVCSRQGAKG GGSSGPPIIP GDGGHVKQRR RRTSNRVECL 180 AKVCLRRDNT REFMVTIFEE KHTHPLCSEA SKQFLRINRN LDVTQQAFIA SCIKANIGTA 240 QMYSLVFVPF TGVDHHRRCI TLGVGLLSKE DVDSYVWLLE RFKTAMGKVS EKAGGELAKD 300 EKMWARSTNL TTQSVVGKVC DRVLVYLNSR GAVMHSEIAG SGVSELAWCN NALRNSCKTT 360 RKTVIGYKYS |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019157573.1 | 9e-73 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07500.1 | 1e-09 | FAR1 family protein |