PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001238.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family NAC
Protein Properties Length: 451aa    MW: 50817.1 Da    PI: 7.5723
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001238.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM177.14.9e-5551321129
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 
                              lppGfrFhPtdeel+++yL +kv++  ++   +i++vd++k+ePwdLp k++ +ekewyfFs rd+ky+tg r+nrat++gyWk+t
  Itr_sc001238.1_g00001.1   5 LPPGFRFHPTDEELITYYLGNKVSDFGFSP-IAIADVDLNKCEPWDLPGKASMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKTT 89 
                              79*************************988.78***************988999******************************** PP

                      NAM  87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                              gkdke+++ + +lvg+kktLvfy+grapkgekt+Wvmheyrle
  Itr_sc001238.1_g00001.1  90 GKDKEIFRGGVQLVGMKKTLVFYRGRAPKGEKTNWVMHEYRLE 132
                              ********99999****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.66E-633152IPR003441NAC domain
PROSITE profilePS5100559.7475152IPR003441NAC domain
PfamPF023651.8E-286131IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MEENLPPGFR FHPTDEELIT YYLGNKVSDF GFSPIAIADV DLNKCEPWDL PGKASMGEKE  60
WYFFSLRDRK YPTGLRTNRA TEAGYWKTTG KDKEIFRGGV QLVGMKKTLV FYRGRAPKGE  120
KTNWVMHEYR LESKHGFKPT KEEWVVCRVF QKCNTIMKKP QATSASSPQS LDESPCDTNT  180
TIANELGDIE LPNFNTTIMP SPSNGIINNI SLQTYNNNEG MNMNMNMNMN NTLPLLSWPP  240
STSLLSSNLS SVNSLLFRAL QLRGQGHHQA AISTSDYTGG YNNMPQFGND LINSNDFTPT  300
STSSMVLDSA NHHHQQQQNP QDSHIWARAR APGADCRLRK RGAEATEGQG PEQLSRPANR  360
EEADGEQSTG HQVGQQASSR APSQALLAFQ FRISDFRIPK ENLCKRWFMK LCNMFLILVV  420
KDKGVRWLTS TNIMVEEVST LPLEHYENSA S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-54415816171NO APICAL MERISTEM PROTEIN
1ut4_B3e-54415816171NO APICAL MERISTEM PROTEIN
1ut7_A3e-54415816171NO APICAL MERISTEM PROTEIN
1ut7_B3e-54415816171NO APICAL MERISTEM PROTEIN
3swm_A3e-54415819174NAC domain-containing protein 19
3swm_B3e-54415819174NAC domain-containing protein 19
3swm_C3e-54415819174NAC domain-containing protein 19
3swm_D3e-54415819174NAC domain-containing protein 19
3swp_A3e-54415819174NAC domain-containing protein 19
3swp_B3e-54415819174NAC domain-containing protein 19
3swp_C3e-54415819174NAC domain-containing protein 19
3swp_D3e-54415819174NAC domain-containing protein 19
4dul_A3e-54415816171NAC domain-containing protein 19
4dul_B3e-54415816171NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00364DAPTransfer from AT3G18400Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019189657.10.0PREDICTED: NAC domain-containing protein 79
TrEMBLA0A2G9HGW41e-131A0A2G9HGW4_9LAMI; Uncharacterized protein
STRINGPOPTR_0015s03700.11e-130(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15224279
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18400.11e-104NAC domain containing protein 58