PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc001225.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | MYB | ||||||||
Protein Properties | Length: 333aa MW: 37041.8 Da PI: 6.1602 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.7 | 2.3e-17 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+t+Ed++l+d++++ G g+W ++++ g++R++k+c++rw +yl Itr_sc001225.1_g00001.1 15 KGPWSTDEDKKLADYIHENGIGNWQLVPKGAGLNRCGKSCRLRWTNYL 62 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 54.5 | 2.6e-17 | 68 | 113 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg +++eE++ +++++kqlG++ W++Ia++++ gRt++++k++++++ Itr_sc001225.1_g00001.1 68 RGCFSEEEEDMIIQLHKQLGNR-WSKIAAKLPAGRTDNEVKNYYNTH 113 899*******************.**********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.206 | 10 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.39E-27 | 13 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.8E-13 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.7E-16 | 15 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.3E-22 | 16 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.15E-10 | 17 | 62 | No hit | No description |
PROSITE profile | PS51294 | 25.345 | 63 | 118 | IPR017930 | Myb domain |
SMART | SM00717 | 7.0E-17 | 67 | 116 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-15 | 68 | 113 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-25 | 70 | 118 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.74E-12 | 71 | 114 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 333 aa Download sequence Send to blast |
MGRYPCCKES SELKKGPWST DEDKKLADYI HENGIGNWQL VPKGAGLNRC GKSCRLRWTN 60 YLRPDIKRGC FSEEEEDMII QLHKQLGNRW SKIAAKLPAG RTDNEVKNYY NTHIKKKLMR 120 LGIDPITHKP LPPNLNHLLN NLPHNYYNSF NNNPIISPLE SILRLQANLT QMANAQLLQN 180 IAQFLNNNNN NIPLPLAQNI NNVPMLFNNN ITTFDNFNVG SNESPPLFDH PLSTTPNSYS 240 IESVLDQPSP MSNSLGFVPG NGDLVPRVLT SNNILSLPPL VSATPETSNS DQMFPTGAMQ 300 CGGGGGGDDD DFSALEKIFC DEGNSSMLES IFQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-29 | 12 | 118 | 4 | 108 | B-MYB |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019181998.1 | 1e-178 | PREDICTED: transcription factor MYB39-like |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21440.1 | 4e-65 | MYB-like 102 |