PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc001219.1_g00005.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C2H2

Protein Properties

Length: 392aa MW: 44370.7 Da PI: 4.7607

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc001219.1_g00005.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.1	0.0006	174	192	5	23
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 +C++ F++ ++L++Hi ++ Itr_sc001219.1_g00005.1 174 HCNMKFKTEEELEQHIASC 192 7***************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF49599	2.29E-6	169	228	IPR008974	TRAF-like
Gene3D	G3DSA:3.90.890.10	2.8E-4	173	209	IPR013323	SIAH-type domain
Gene3D	G3DSA:3.90.890.10	8.4E-4	210	244	IPR013323	SIAH-type domain
Pfam	PF02176	4.2E-11	216	274	IPR001293	Zinc finger, TRAF-type
PROSITE profile	PS50145	12.391	216	262	IPR001293	Zinc finger, TRAF-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016567	Biological Process	protein ubiquitination
GO:0004842	Molecular Function	ubiquitin-protein transferase activity
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 392 aa Download sequence Send to blast
MELLSIDGEV KPATLEKVKE EGLLLYCNLF DAEMVYKIAE EFLMGFASAC VDNTMGGLWS 60 SPGAVAVDIR QEMVEYLIRR SETFVAESIV LECTPDIGVF ANPYDIISGF IDDFAHSKRN 120 FFSHVSVWLS SDRREDRIED FVEELELNGF WLMSQREEVA KTLLRNVDFK TSYHCNMKFK 180 TEEELEQHIA SCNFRTLNCL NEGCDAVYSA GKLEEHDSNC PFKTLPCEQK CADSIMRRNM 240 DRHCITVCPM KLVNCPFYPV GCLFTIPQHT VGQHRAENLQ SHLICVLKLI HKEASLEALK 300 ERAELLEKAL SPERLSAAKD ARSLTFIIKA HNAKLGPLVG VKKSAESDAE DDKLTNDEDN 360 SMALSSMGKQ LYKNEVPTIL QTETQEDIRV TL

Sequence ? help Back to Top

Protein Sequence Length: 392 aa Download sequence Send to blast

MELLSIDGEV KPATLEKVKE EGLLLYCNLF DAEMVYKIAE EFLMGFASAC VDNTMGGLWS  60
SPGAVAVDIR QEMVEYLIRR SETFVAESIV LECTPDIGVF ANPYDIISGF IDDFAHSKRN  120
FFSHVSVWLS SDRREDRIED FVEELELNGF WLMSQREEVA KTLLRNVDFK TSYHCNMKFK  180
TEEELEQHIA SCNFRTLNCL NEGCDAVYSA GKLEEHDSNC PFKTLPCEQK CADSIMRRNM  240
DRHCITVCPM KLVNCPFYPV GCLFTIPQHT VGQHRAENLQ SHLICVLKLI HKEASLEALK  300
ERAELLEKAL SPERLSAAKD ARSLTFIIKA HNAKLGPLVG VKKSAESDAE DDKLTNDEDN  360
SMALSSMGKQ LYKNEVPTIL QTETQEDIRV TL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019196737.1	0.0	PREDICTED: uncharacterized protein LOC109190647
Refseq	XP_019196738.1	0.0	PREDICTED: uncharacterized protein LOC109190647
Refseq	XP_019196739.1	0.0	PREDICTED: uncharacterized protein LOC109190647
Refseq	XP_019196740.1	0.0	PREDICTED: uncharacterized protein LOC109190647
TrEMBL	A0A1S4CGI7	1e-175	A0A1S4CGI7_TOBAC; uncharacterized protein LOC107818549
STRING	XP_009760340.1	1e-175	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4442	3	3