PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc001181.1_g00008.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C2H2

Protein Properties

Length: 419aa MW: 45387.8 Da PI: 9.6166

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc001181.1_g00008.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.2	6.1e-05	186	208	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C++Cg+ F ++ L+ H + H Itr_sc001181.1_g00008.1 186 SCHKCGEQFGKWEALEAHHLSkH 208 6*****************99877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	187	208	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	4.03E-22	210	418	No hit	No description
Gene3D	G3DSA:3.90.228.10	3.7E-7	211	395	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 419 aa Download sequence Send to blast
MPAVWFSLKR SMHCKSEPSE VHNPKTRKEL NTILTRKPAG RSGCSRSIAN LKDVIHGSKR 60 HLEKPPSCSP RSIGSSEFLN PITHEVVLRN NSRCELRITS FGGFPDGLGG GGGGGGGSFV 120 GTLRPGTPGP GGHHTMHYFS SSQRNPAATP PRRTNSASFG EKEGIGFASK PRASLQIDSN 180 GCSSVSCHKC GEQFGKWEAL EAHHLSKHAV TELLEGDSSR KIVEIICRSS WLKSESQGGR 240 IEKVLKVHNT QKTLARFEEY REVVKIKASK LPKKHPRCLA DGNELLRFYG TTVGCSLGTG 300 GGCSLCTSDK CYVCQIIRNG FSTKNEIKDG IGVFTTSTSG RAFESIEASE GDPPPRKALI 360 VCRVIAGRVH RPLENIQEMA GQIGFDSLAG KVGLYSNIEE LYLLNPRALL PCFVVICKS

Sequence ? help Back to Top

Protein Sequence Length: 419 aa Download sequence Send to blast

MPAVWFSLKR SMHCKSEPSE VHNPKTRKEL NTILTRKPAG RSGCSRSIAN LKDVIHGSKR  60
HLEKPPSCSP RSIGSSEFLN PITHEVVLRN NSRCELRITS FGGFPDGLGG GGGGGGGSFV  120
GTLRPGTPGP GGHHTMHYFS SSQRNPAATP PRRTNSASFG EKEGIGFASK PRASLQIDSN  180
GCSSVSCHKC GEQFGKWEAL EAHHLSKHAV TELLEGDSSR KIVEIICRSS WLKSESQGGR  240
IEKVLKVHNT QKTLARFEEY REVVKIKASK LPKKHPRCLA DGNELLRFYG TTVGCSLGTG  300
GGCSLCTSDK CYVCQIIRNG FSTKNEIKDG IGVFTTSTSG RAFESIEASE GDPPPRKALI  360
VCRVIAGRVH RPLENIQEMA GQIGFDSLAG KVGLYSNIEE LYLLNPRALL PCFVVICKS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019196263.1	0.0	PREDICTED: uncharacterized protein LOC109190250
TrEMBL	A0A1U8AWZ1	0.0	A0A1U8AWZ1_NELNU; uncharacterized protein LOC104604941
STRING	XP_010267823.1	0.0	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2244	22	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27240.1	1e-120	C2H2 family protein