PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc001175.1_g00014.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | LBD | ||||||||
Protein Properties | Length: 183aa MW: 20258.6 Da PI: 6.3828 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 135.9 | 1.4e-42 | 19 | 117 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 +CaaCk+lrrkC +dC++apyfpae+p++fanvh++FGasnv k+l+a+p+++r+da++sl+yeAear++dPvyG+v+ i+ lq++ Itr_sc001175.1_g00014.1 19 PCAACKFLRRKCLPDCIFAPYFPAEEPQQFANVHRIFGASNVGKTLSAIPPHQRQDAVNSLAYEAEARTKDPVYGCVAAISVLQRH 104 7************************************************************************************* PP DUF260 87 leqlkaelallke 99 + +l++el+ +++ Itr_sc001175.1_g00014.1 105 VIRLQKELDDTNA 117 *******998765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.511 | 18 | 119 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.0E-42 | 19 | 115 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence Send to blast |
MSFSSSPSSS SSSSYSNPPC AACKFLRRKC LPDCIFAPYF PAEEPQQFAN VHRIFGASNV 60 GKTLSAIPPH QRQDAVNSLA YEAEARTKDP VYGCVAAISV LQRHVIRLQK ELDDTNADLM 120 RYTAKPHPHH HQGYPGMEFV TMNQTAEYRD NNQQRASDNE FGMPPPAAGD LSAYYPEVVD 180 ADC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-57 | 9 | 122 | 1 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-57 | 9 | 122 | 1 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019183210.1 | 8e-97 | PREDICTED: LOB domain-containing protein 25-like | ||||
Refseq | XP_019183211.1 | 8e-97 | PREDICTED: LOB domain-containing protein 25-like | ||||
Refseq | XP_019183212.1 | 8e-97 | PREDICTED: LOB domain-containing protein 25-like | ||||
Swissprot | Q8L8Q3 | 3e-62 | LBD25_ARATH; LOB domain-containing protein 25 | ||||
TrEMBL | A0A068U181 | 1e-66 | A0A068U181_COFCA; Uncharacterized protein | ||||
STRING | XP_009597524.1 | 1e-66 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA43 | 24 | 669 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27650.1 | 4e-62 | LOB domain-containing protein 25 |
Publications ? help Back to Top | |||
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