PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc001169.1_g00004.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C2H2

Protein Properties

Length: 434aa MW: 47723.6 Da PI: 9.2034

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc001169.1_g00004.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.5	1.2e-05	70	92	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Itr_sc001169.1_g00004.1 70 FVCEICNKGFQRDQNLQLHRRGH 92 89*******************88 PP
2	zf-C2H2	12.1	0.0006	147	169	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H + + Itr_sc001169.1_g00004.1 147 WKCDKCSKRYAVQSDWKAHSKIC 169 58*****************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.4E-7	69	92	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.4E-5	69	92	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF12171	6.7E-5	70	92	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE profile	PS50157	10.949	70	92	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.017	70	92	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	72	92	IPR007087	Zinc finger, C2H2
SMART	SM00355	84	112	142	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	3.0E-5	135	168	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.4E-7	142	167	No hit	No description
SMART	SM00355	140	147	167	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 434 aa Download sequence Send to blast
MIKAVQLVDD SMSNLTSASN DNAISISSTQ QQPSTTNQAV KRKRNQAGNP DPEAEVVALS 60 PNTLFATNRF VCEICNKGFQ RDQNLQLHRR GHNLPWKLKQ RNKEEVVKKK VYVCPETSCV 120 HHDPARALGD LTGIKKHYSR KHGEKKWKCD KCSKRYAVQS DWKAHSKICG TREYRCDCGT 180 LFSRRDSFIT HRAFCDALAE ESARSSSLTP LPNALFSTQP PPPLSATATS LQTLHNLQAT 240 FNHLRQPAEM PPWLACPPPL PPPPPLKATG PTQFLENPNP SSLLVSPPHM SATALLQKAA 300 QLGVTSNNTI ASTGNLIRPH HHHHQNQNQN QNQIHHHMMG TAAAGFFSSR EELASSYGTN 360 KPAAGHASLT TGCMEMMGGT TGSDTTGFYY HHQGFNGGRE NTDIEGLNTR DFLSLTASFS 420 SSKGFSQNSA CWPP

Sequence ? help Back to Top

Protein Sequence Length: 434 aa Download sequence Send to blast

MIKAVQLVDD SMSNLTSASN DNAISISSTQ QQPSTTNQAV KRKRNQAGNP DPEAEVVALS  60
PNTLFATNRF VCEICNKGFQ RDQNLQLHRR GHNLPWKLKQ RNKEEVVKKK VYVCPETSCV  120
HHDPARALGD LTGIKKHYSR KHGEKKWKCD KCSKRYAVQS DWKAHSKICG TREYRCDCGT  180
LFSRRDSFIT HRAFCDALAE ESARSSSLTP LPNALFSTQP PPPLSATATS LQTLHNLQAT  240
FNHLRQPAEM PPWLACPPPL PPPPPLKATG PTQFLENPNP SSLLVSPPHM SATALLQKAA  300
QLGVTSNNTI ASTGNLIRPH HHHHQNQNQN QNQIHHHMMG TAAAGFFSSR EELASSYGTN  360
KPAAGHASLT TGCMEMMGGT TGSDTTGFYY HHQGFNGGRE NTDIEGLNTR DFLSLTASFS  420
SSKGFSQNSA CWPP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	2e-36	143	209	3	69	Zinc finger protein JACKDAW
5b3h_F	2e-36	143	209	3	69	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019161922.1	0.0	PREDICTED: protein indeterminate-domain 11-like
Refseq	XP_019161923.1	0.0	PREDICTED: protein indeterminate-domain 11-like
Swissprot	Q8H1F5	1e-116	IDD7_ARATH; Protein indeterminate-domain 7
TrEMBL	A0A2R6Q314	1e-134	A0A2R6Q314_ACTCH; Protein indeterminate-domain like
STRING	POPTR_0006s24410.1	1e-132	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA103	24	350

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G45260.1	6e-96	C2H2-like zinc finger protein

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]