PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001159.1_g00004.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family LBD
Protein Properties Length: 268aa    MW: 28974.2 Da    PI: 7.0275
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001159.1_g00004.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601216.3e-3852151199
                   DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 
                              +C aCk+lrrkC+++C++ap+f ++q +++fa+vhk+FGasnv+kll ++p ++r+da+ ++ yeA+ar++dPvyG+v++il+lqq
  Itr_sc001159.1_g00004.1  52 PCGACKFLRRKCVSSCIFAPHFGSDQgAARFAAVHKVFGASNVSKLLLHIPANRRHDAVVTISYEAQARLSDPVYGCVSTILALQQ 137
                              7***********************9989********************************************************** PP

                   DUF260  86 qleqlkaelallke 99 
                              q+++++++ +++++
  Itr_sc001159.1_g00004.1 138 QMKSHQEDGDEVRH 151
                              ******99887765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.4451153IPR004883Lateral organ boundaries, LOB
PfamPF031954.4E-3752148IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:1900150Biological Processregulation of defense response to fungus
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MDAQSHPHSD GGASSDAAPR RKCTGKRAAP EPGATPPPAP APAPAAITIQ APCGACKFLR  60
RKCVSSCIFA PHFGSDQGAA RFAAVHKVFG ASNVSKLLLH IPANRRHDAV VTISYEAQAR  120
LSDPVYGCVS TILALQQQMK SHQEDGDEVR HTGQVASLQA ELAMVQTQIM NSRFAVANAL  180
QTSQQQQQHQ QQQQQHLQQH AALQPAYSNT SSASNNLLNI SNFSSNFDLT TGAPNFDPIV  240
QLSHPSQEEE EDEEQSHNPI AFTNHMFR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A8e-34431692126LOB family transfactor Ramosa2.1
5ly0_B8e-34431692126LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019199992.11e-135PREDICTED: LOB domain-containing protein 20-like
SwissprotQ9SRV36e-67LBD20_ARATH; LOB domain-containing protein 20
TrEMBLA0A328DXL01e-102A0A328DXL0_9ASTE; Uncharacterized protein
STRINGXP_002525698.12e-89(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.19e-65LOB domain-containing protein 20