PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc001149.1_g00013.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | MYB | ||||||||
Protein Properties | Length: 288aa MW: 32472 Da PI: 10.0824 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.9 | 2.3e-18 | 44 | 89 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l ++v+++G+ +W++Ia++++ gR++k+c++rw++ Itr_sc001149.1_g00013.1 44 RGHWRPHEDSRLRELVAKHGPQNWNLIAEKIP-GRSGKSCRLRWFNQ 89 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 55.9 | 1e-17 | 97 | 139 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +++T+eE+e+l+ a++++G++ W+ Iar ++ gRt++ +k++w+ Itr_sc001149.1_g00013.1 97 KAFTEEEEERLLTAHRMYGNK-WAIIARLFP-GRTDNAVKNHWHV 139 689******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.529 | 39 | 90 | IPR017930 | Myb domain |
SMART | SM00717 | 6.7E-15 | 43 | 92 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 5.62E-29 | 44 | 137 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.5E-17 | 44 | 89 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-26 | 45 | 97 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.78E-14 | 47 | 88 | No hit | No description |
PROSITE profile | PS51294 | 25.091 | 91 | 145 | IPR017930 | Myb domain |
SMART | SM00717 | 6.9E-15 | 95 | 143 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.9E-15 | 97 | 138 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.2E-20 | 98 | 143 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.58E-7 | 107 | 138 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 288 aa Download sequence Send to blast |
MSFKAFESSS SGAFRFPPPP GPATLGLEEP EKRTGEQSHR LCARGHWRPH EDSRLRELVA 60 KHGPQNWNLI AEKIPGRSGK SCRLRWFNQL DPRINTKAFT EEEEERLLTA HRMYGNKWAI 120 IARLFPGRTD NAVKNHWHVI MARRHRHQTT GGARRRHPRN QNNNNNTMDS NNFVQIKNLN 180 DESAASTCTD LSLSTSSSSS SKLPPNHFHL TGFGPTPTHY HQILPTTPGR PESSPDSLNT 240 ASDSVANNNN YGSEAEMCGQ NQTAIYDNKF NNNKNKMLFF DFLGVGAN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-31 | 42 | 144 | 5 | 107 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor required for sugar partitioning from leaves to anthers during male reproductive development. Required for the production of functional pollen grains. Binds to the promoter of the anther-specific sugar transporter MST8 and regulates its expression. Regulates the expression of genes involved in sugar partitioning in flower, such as the sugar transporter SUT3, the invertase INV4, the UDP-glucose pyrophosphorylase UGP2 and the starch synthase WAXY. {ECO:0000269|PubMed:20305120}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by wounding. {ECO:0000269|PubMed:20305120}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019165671.1 | 1e-124 | PREDICTED: transcriptional activator Myb-like | ||||
Swissprot | Q5NBM8 | 8e-68 | CSA_ORYSJ; Transcription factor CSA | ||||
TrEMBL | A0A1J6KH22 | 3e-83 | A0A1J6KH22_NICAT; Transcription factor myb44 | ||||
STRING | XP_009587330.1 | 4e-83 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1684 | 24 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69560.1 | 6e-64 | myb domain protein 105 |