PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc001147.1_g00004.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 483aa MW: 55582.1 Da PI: 6.2998

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc001147.1_g00004.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	32.7	2.4e-10	82	161	5	75
FAR1 5 eYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..........tekerrtraetrtgCkaklkvkkekdgk 75 +YA+ GF+vr+s+ kk+ + geit++ +vCs++g++ +k +k+rr+r+++r+gC+ak++ ++ ++ Itr_sc001147.1_g00004.1 82 SYARVGGFNVRQSTVKKN-MIGEITMKYLVCSRQGFKGCCCNKlkireegddiITKQRRRRTSNRVGCNAKVNQALDFGHQ 161 7**********99998.8888***********9999999***999999***********9877776555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	9.1E-7	82	157	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	8.8E-22	263	347	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 483 aa Download sequence Send to blast
MDVVWASPSI HPFYDFIHLF EFTETEMYRS ADFKITWMQS GYLHMDGDED WVLDGDFLSA 60 PASILLRFTK SDICWVWVTR RSYARVGGFN VRQSTVKKNM IGEITMKYLV CSRQGFKGCC 120 CNKLKIREEG DDIITKQRRR RTSNRVGCNA KVNQALDFGH QTFIANCALA NIGPTQTFRL 180 YKQVVGGFEH IGATVVEFFN FKRDLQAYIE GGDAQMIIEK LCQKKEFCTY FYYAFQVDED 240 NHLSRLFWYD PIAWCNFSNF GDIVSFDATY GTNKYILAFV PFTSVDNHKQ CVTFAAGLLT 300 KEDVDSYTWL LENFKDAMGQ SPLCFVTDQD PAIKIAIPCV FDKCRHHFWE NSAFGKFTYP 360 HASLLEFYMN FEGVIDAQRH NQSKRDAECE GYLPELKTPL ELEHHVATTY TITIFFEVQK 420 EIIGGYFNCR VIAIRGEGEL TMYDIKGDNG RIFRVQHNSV VSEHSKAVHC ATVDAASYYG 480 AND

Sequence ? help Back to Top

Protein Sequence Length: 483 aa Download sequence Send to blast

MDVVWASPSI HPFYDFIHLF EFTETEMYRS ADFKITWMQS GYLHMDGDED WVLDGDFLSA  60
PASILLRFTK SDICWVWVTR RSYARVGGFN VRQSTVKKNM IGEITMKYLV CSRQGFKGCC  120
CNKLKIREEG DDIITKQRRR RTSNRVGCNA KVNQALDFGH QTFIANCALA NIGPTQTFRL  180
YKQVVGGFEH IGATVVEFFN FKRDLQAYIE GGDAQMIIEK LCQKKEFCTY FYYAFQVDED  240
NHLSRLFWYD PIAWCNFSNF GDIVSFDATY GTNKYILAFV PFTSVDNHKQ CVTFAAGLLT  300
KEDVDSYTWL LENFKDAMGQ SPLCFVTDQD PAIKIAIPCV FDKCRHHFWE NSAFGKFTYP  360
HASLLEFYMN FEGVIDAQRH NQSKRDAECE GYLPELKTPL ELEHHVATTY TITIFFEVQK  420
EIIGGYFNCR VIAIRGEGEL TMYDIKGDNG RIFRVQHNSV VSEHSKAVHC ATVDAASYYG  480
AND

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019197079.1	1e-121	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3136	2	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-34	FAR1-related sequence 5