PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001135.1_g00008.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 248aa    MW: 27636 Da    PI: 8.5164
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001135.1_g00008.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.90.00068100122123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              y+C+ C+++F++   L  H  +H
  Itr_sc001135.1_g00008.1 100 YECKTCNRVFPSFQALGGHRASH 122
                              99**********99999998887 PP
2zf-C2H214.10.00014167189123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              ++C++Cg  Fs+   L  H+r+H
  Itr_sc001135.1_g00008.1 167 HECSICGAEFSSGQALGGHMRRH 189
                              78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.61E-999122No hitNo description
PfamPF139124.7E-1499124IPR007087Zinc finger, C2H2
SMARTSM003550.06100122IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.388100127IPR007087Zinc finger, C2H2
PROSITE patternPS000280102122IPR007087Zinc finger, C2H2
SuperFamilySSF576677.61E-9162189No hitNo description
PfamPF139129.6E-13167190IPR007087Zinc finger, C2H2
PROSITE profilePS501579.743167189IPR007087Zinc finger, C2H2
SMARTSM003550.01167189IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280169189IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MEGFEVRKRE ESSICTMKKR RTKRPRHHDT SSSLSSFSDN SDHRSLSNHS GIEFNNHHRV  60
EEEEDMAKCL MLLSQGHVRK PPPSSSPPSA AAAGMNREVY ECKTCNRVFP SFQALGGHRA  120
SHRKPKAAEQ NQESVDEDVT TLSLQIPGRA VVSVSSPPRN KVSNRIHECS ICGAEFSSGQ  180
ALGGHMRRHR PLPTAADQEI KKPSRHPLAL DLNLPAPEDD HREITKFSFA AKEQVIVFSA  240
SPLVDCHY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1620RKREESSICTMKKRR
21623MKKRRTKR
31722KKRRTK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellin and H(2)O(2). Down-regulated by ascorbate. {ECO:0000269|PubMed:12837949, ECO:0000269|PubMed:16244149}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019167775.11e-127PREDICTED: zinc finger protein ZAT5-like
SwissprotQ681X47e-50ZAT5_ARATH; Zinc finger protein ZAT5
TrEMBLV4SM302e-69V4SM30_9ROSI; Uncharacterized protein
STRINGXP_006493540.15e-70(Citrus sinensis)
STRINGXP_006428462.13e-70(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12622480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.11e-50C2H2 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]