PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc001129.1_g00013.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB

Protein Properties

Length: 259aa MW: 28374.2 Da PI: 8.1648

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc001129.1_g00013.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.9	2e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+ll+++++++G g+W++ ++ g+ R++k+c++rw +yl Itr_sc001129.1_g00013.1 14 KGAWTKEEDQLLINYIRLHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	55.8	1.1e-17	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++T++Ed+l+++++ +lG++ W++Ia++++ gRt++++k++w++ Itr_sc001129.1_g00013.1 67 RGNFTQQEDDLIIKLHSLLGNK-WSLIAARLP-GRTDNEIKNYWNT 110 89******************.*****.*********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.9E-24	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	17.346	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	1.33E-29	13	108	IPR009057	Homeodomain-like
SMART	SM00717	2.2E-14	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	4.0E-16	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	3.31E-12	16	61	No hit	No description
PROSITE profile	PS51294	27.869	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.0E-27	65	117	IPR009057	Homeodomain-like
SMART	SM00717	1.7E-16	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	2.2E-16	67	110	IPR001005	SANT/Myb domain
CDD	cd00167	2.18E-12	69	110	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence Send to blast
MGRSPCCEKA HTNKGAWTKE EDQLLINYIR LHGEGCWRSL PKAAGLLRCG KSCRLRWINY 60 LRPDLKRGNF TQQEDDLIIK LHSLLGNKWS LIAARLPGRT DNEIKNYWNT QIKRKLISRG 120 IDPQTHRPLD SSAGAGAGTT KPENISMDLS SSAPSQEETK CSSGTTSEES NHQSLKDKQR 180 NEQMGGLDLS IGLALHPKTE DSAESTASGE LLPVAPPPAA VELSVTEAVC LCWQLGSLSG 240 GLCNKCHTTK CFLGYCQPS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	1e-28	14	116	7	108	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019157885.1	1e-162	PREDICTED: myb-related protein 330-like
Swissprot	P81395	1e-91	MYB30_ANTMA; Myb-related protein 330
TrEMBL	A0A1S3XZV2	1e-108	A0A1S3XZV2_TOBAC; myb-related protein 330-like
TrEMBL	A0A1U7VIK6	1e-108	A0A1U7VIK6_NICSY; myb-related protein 330-like
STRING	XP_009767902.1	1e-109	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12	24	2154

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22640.1	2e-90	myb domain protein 3

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]