PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001125.1_g00006.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family FAR1
Protein Properties Length: 1008aa    MW: 112355 Da    PI: 9.1454
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001125.1_g00006.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR156.68.9e-18596694191
                     FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.........tekerrtraetrtgCkaklkvkkekdgkwe 77 
                              kfY +Y++  GF+vr +++k+   +ge+ +r +vCs++g++   +++         ++k+rr+r ++r++C ak+ ++++++g+++
  Itr_sc001125.1_g00006.1 596 KFYMSYGHADGFDVRHNTMKRG-WDGEVSMRYLVCSRQGTKGGGSSDpstvngeggHVKQRRKRISNRVQCLAKICLRRDNTGEFM 680
                              6****************99887.9999**************999988999************************************ PP

                     FAR1  78 vtkleleHnHelap 91 
                              vt +e++H+H+l++
  Itr_sc001125.1_g00006.1 681 VTIFEENHTHPLCS 694
                              ************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577561.14E-8228270IPR001878Zinc finger, CCHC-type
PfamPF000982.5E-5235252IPR001878Zinc finger, CCHC-type
SMARTSM003430.0022236252IPR001878Zinc finger, CCHC-type
Gene3DG3DSA:4.10.60.104.8E-9236270IPR001878Zinc finger, CCHC-type
PROSITE profilePS501589.834237252IPR001878Zinc finger, CCHC-type
SMARTSM003430.02254270IPR001878Zinc finger, CCHC-type
PROSITE profilePS501589.405255270IPR001878Zinc finger, CCHC-type
PfamPF000980.0019255270IPR001878Zinc finger, CCHC-type
PfamPF139762.6E-8412473IPR025724GAG-pre-integrase domain
SuperFamilySSF530984.17E-11508562IPR012337Ribonuclease H-like domain
Gene3DG3DSA:3.30.420.101.2E-5509562IPR012337Ribonuclease H-like domain
PfamPF031011.4E-14596693IPR004330FAR1 DNA binding domain
PfamPF105514.0E-6734780IPR018289MULE transposase domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1008 aa     Download sequence    Send to blast
MGRPHRRNLV VIGVATRLYA PSLSAAPEST RRRVRRFLAS STVKIWIAVS SHLMAKGRTI  60
IVVSTPSKLI DVVLAPDGSN FSEWEFLIKV NLGGMGKDGH LTEVCPTTGS ADTSASDALC  120
AAMPISNDVA EMKKQRDQLL VFSWILGLGT KYDVLKSQLL GDKELESLDQ VFARVHNASG  180
NISSGEVSER HVFLSQDNMG EEKALLSQGN GSDNRGGRFR GQGRGGRGGG REGPRVCYNC  240
GNPNHLRNQC PKPFCYACRD PGHLRNQCPK LFRPQRFANS VMKPEGHTIV VTDEELALFN  300
QLKVPSSQPP TNHDSESSRS ATFVQTGNLV ACVSSSSSRK WVSDSGASDH MSGNPSLFST  360
YFPFGCGTTV TLADGSSTTV LGTVKVMQLL LRDYPFHLLT KEIIGKGKET GGLYVLDQLV  420
SRGVAYVSLL GNTTPFQLHC RYGHPSLPTL KKLCPNLESL SVLQCESCEL AKHCRGTYLP  480
RVNNRVESLF QLVHTDVWGP CRVSSKSGFR PQQNGVAERN NRHLLEVARA LLFQMKVPKI  540
FWSDAVHTAC FMINRLPSSV LRAQASTDPS FWTPNVDAMI RPAIGLRFKT MNEGVKFYMS  600
YGHADGFDVR HNTMKRGWDG EVSMRYLVCS RQGTKGGGSS DPSTVNGEGG HVKQRRKRIS  660
NRVQCLAKIC LRRDNTGEFM VTIFEENHTH PLCSEASKQF LCINRNLDAT QQAFIASSIK  720
ANIGTAQSFR LRKEYSLVFV SFTGVDNHRR CITLGAGLLT KEDMESYVWL LDRFKTAIES  780
RHRFCMWHIM TKVSEKAGGE LAKDEVFRKK LNSIVWSDRI VVEEFEAQWQ GLMAEYDLGE  840
HRWLNKLYAE RMFWIQAYFL DLPMSGLLRT TSQSEGEYST YAQRHKQAKL NAQCKGYSPE  900
FKTPLALERH VAQIYTITIF YEVQKEIVGG CFFCRVVSNC EDKGLMVYVI KDEWNRAYIL  960
GVQGCTTRVG PPPPPNMSWV GGANSVAFGE SWTNVVLVAP PEMVMNLL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.17e-23FAR1-related sequence 5