PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001119.1_g00007.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family FAR1
Protein Properties Length: 451aa    MW: 51016.4 Da    PI: 8.9147
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001119.1_g00007.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR131.94.4e-103812190
                     FAR1 21 kskrngeitkrtfvCskegkreeekkk...........tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90
                             k++ +g i+++  vCs+eg+++    +            + ++r+r+++r+ C+a++    +  g+++++++e+ HnH+l+
  Itr_sc001119.1_g00007.1  3 KKSSDGVIVWKYIVCSREGFKNVVCMDnsstaeldgveCSVRKRQRVSNRVRCRARVGYASN--GTYCIHSFEERHNHSLS 81
                             4557999**************987666678999**9987888999**********9887766..***************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.0E-7381IPR004330FAR1 DNA binding domain
PROSITE profilePS501588.647433446IPR001878Zinc finger, CCHC-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MMKKSSDGVI VWKYIVCSRE GFKNVVCMDN SSTAELDGVE CSVRKRQRVS NRVRCRARVG  60
YASNGTYCIH SFEERHNHSL SSILSRQFLK GNRKIGIGHM KFVADCVKAN IDSAKFSVVQ  120
GDGGEFLKCR PMRFLGRTLP FLVMLCHLMP HIKRAEINEA MGSEPTLFVT DQDPAMRVAF  180
PHVFKEVKHS DCEASIPDLK TPLAMEKHAA YVYTVVIFYE VQSEICAACF SCRVVNVRED  240
KGFLYYEIKD GDNRIFSVVH NVVEVIASCG CKMFQRLELL CRNIFVVFKD LKLDSTPLRY  300
VVKRWTKDAS LGRSFDIDGV VVDQWEGVDA KLVLLKSVWS DIQCYISIVQ FDMDRLQMFS  360
QIIKEHKDMF LSDPGYCSSI VGKRSIIEAI CGSSVPSDVS VLPPKKAKNK GSGKRIKGFK  420
EIAVEESKKE WTCKTCNKPG HDSRNCVLGK K
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019158687.11e-135PREDICTED: protein FAR1-RELATED SEQUENCE 3-like
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.17e-16FAR1-related sequence 5