PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc001113.1_g00009.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | LBD | ||||||||
Protein Properties | Length: 209aa MW: 23812 Da PI: 5.0362 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 113.7 | 1.3e-35 | 7 | 107 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 +C aCk+lrr+C+++Cv+apyf+ +q +++fa+vhk+FGasnv+k+l +lp + r +a+ ++ yeA ar+++P yG+v+ il+lqq Itr_sc001113.1_g00009.1 7 SCGACKFLRRRCSSGCVFAPYFCYDQaASNFAAVHKVFGASNVSKMLLHLPVDCRGEAALAISYEAIARMQNPKYGCVAQILTLQQ 92 6************************978********************************************************** PP DUF260 86 qleqlkaelallkee 100 q+e+lk+e++ +++ Itr_sc001113.1_g00009.1 93 QVENLKQEIENFEKQ 107 ********9988776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 21.176 | 6 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.3E-33 | 7 | 104 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MTGPGSSCGA CKFLRRRCSS GCVFAPYFCY DQAASNFAAV HKVFGASNVS KMLLHLPVDC 60 RGEAALAISY EAIARMQNPK YGCVAQILTL QQQVENLKQE IENFEKQMPR PACEVPEQNT 120 IDEIQFSSKY KNTSINNYMN QNSEQSYLED MSVKPFDKQT TMQHPQTMTR WEDEIILPSY 180 DTDIYDLLDG MEQNIYLQHL LMNSGSIYH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-31 | 3 | 113 | 7 | 116 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-31 | 3 | 113 | 7 | 116 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:15659631}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019157257.1 | 1e-148 | PREDICTED: LOB domain-containing protein 33-like | ||||
Swissprot | Q9SLB6 | 9e-46 | LBD17_ARATH; LOB domain-containing protein 17 | ||||
TrEMBL | A0A1S4BHD4 | 4e-60 | A0A1S4BHD4_TOBAC; LOB domain-containing protein 33-like | ||||
TrEMBL | A0A1U7UT89 | 4e-60 | A0A1U7UT89_NICSY; LOB domain-containing protein 33-like | ||||
STRING | XP_009757428.1 | 6e-61 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12769 | 15 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42440.1 | 4e-48 | LBD family protein |
Publications ? help Back to Top | |||
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