PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc001111.1_g00011.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | ERF | ||||||||
Protein Properties | Length: 185aa MW: 19759.1 Da PI: 6.5202 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 48.8 | 1.7e-15 | 35 | 82 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r ++ +Wv+eIr+p++ ++r++lg++ t+e+Aa+a++ a+++l+g Itr_sc001111.1_g00011.1 35 YRGIR--SRGEKWVSEIREPRK---TTRIWLGTYPTPEMAAAAYDVAALALRG 82 99996..66799*******843...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 19.651 | 34 | 90 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.1E-28 | 34 | 96 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.6E-18 | 34 | 91 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-26 | 34 | 91 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.41E-15 | 35 | 92 | No hit | No description |
PRINTS | PR00367 | 6.2E-7 | 35 | 46 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.1E-9 | 35 | 82 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.2E-7 | 72 | 92 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence Send to blast |
MADPYSRSQH HPGFYSVASP ATSRGGTSAG KHPMYRGIRS RGEKWVSEIR EPRKTTRIWL 60 GTYPTPEMAA AAYDVAALAL RGSEAVLNFP AHAPRYPVPA TSSPADIRNA ATAGAAIFQP 120 GTAASQPPAA APGGEYIDEE AIFDMPNLLV DMAGGMMVSP PRMNPLPSDD SPSWNSDAES 180 RLWSF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-13 | 24 | 90 | 3 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019156063.1 | 8e-89 | PREDICTED: ethylene-responsive transcription factor ERF025-like | ||||
Swissprot | Q9FJ90 | 6e-43 | ERF25_ARATH; Ethylene-responsive transcription factor ERF025 | ||||
TrEMBL | A0A484KTM9 | 3e-66 | A0A484KTM9_9ASTE; Uncharacterized protein | ||||
STRING | POPTR_0003s12120.1 | 7e-62 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA553 | 22 | 110 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52020.1 | 2e-42 | ERF family protein |
Publications ? help Back to Top | |||
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