PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001111.1_g00010.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 339aa    MW: 37356.9 Da    PI: 5.0504
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001111.1_g00010.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.19e-1865116156
                      AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                              + y+GVr++  +g+Wv+e+r+p     + kr+++g++ t+e+Aa+a++ a+++l+ge
  Itr_sc001111.1_g00010.1  65 PVYRGVRRRG-NGKWVCELREPI----KqKRIWVGSYPTPEMAARAHDVAALALRGE 116
                              68*****999.8*********72....35**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.5E-1365116IPR001471AP2/ERF domain
SuperFamilySSF541714.97E-2066125IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.4E-2766125IPR001471AP2/ERF domain
PROSITE profilePS5103221.57566123IPR001471AP2/ERF domain
SMARTSM003801.1E-2666129IPR001471AP2/ERF domain
CDDcd000185.38E-2867125No hitNo description
PRINTSPR003671.5E-66778IPR001471AP2/ERF domain
PRINTSPR003671.5E-689105IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MNYESASWSD QNGQLPPATS SVSGSCSSSN CMAAQYSDED VLVLAAMRKP KRPAGRKKFK  60
ETRHPVYRGV RRRGNGKWVC ELREPIKQKR IWVGSYPTPE MAARAHDVAA LALRGELATL  120
NFADSVWRLP VPVSKDAKDI RRAAVMAAEG FRETKVEEEV ESKLRVDVSN IDDEAWMASP  180
VAGEEMGVDG IIEKMAEAVL YSPACMQLGN VFSSWDEVDQ VGIGSDDVKT ENLDARMLNG  240
FATVVAVPFF TCFPHLSFEE INAGHPRKDQ SRTFMGFQSS FLQPQNAVTT NNHTSNDADR  300
SDGGRSEDDV EQPSSPSVKK TEEIEGSHCC PPSQMQTLC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15159RPAGRKKFK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019156037.11e-104PREDICTED: dehydration-responsive element-binding protein 1E-like
TrEMBLM1AXQ04e-64M1AXQ0_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000326227e-65(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26324183
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63030.22e-40ERF family protein