PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc001106.1_g00005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | MYB | ||||||||
Protein Properties | Length: 332aa MW: 37751.2 Da PI: 6.6022 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.2 | 4.3e-09 | 20 | 49 | 1 | 30 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIart 30 rg+WT+eEd ll+++++++G g+W++ a+ Itr_sc001106.1_g00005.1 20 RGPWTEEEDGLLIHYIALHGQGRWNLLAKS 49 89************************9986 PP | |||||||
2 | Myb_DNA-binding | 50.4 | 5.2e-16 | 155 | 198 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ ++eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++ Itr_sc001106.1_g00005.1 155 RGNLSPEEQLLILELHLKWGNR-WSRIAEHLP-GRTDNEIKNYWRT 198 7899******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 7.329 | 18 | 53 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 3.52E-7 | 18 | 50 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.2E-9 | 19 | 151 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-7 | 20 | 49 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-19 | 21 | 52 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.45E-6 | 22 | 48 | No hit | No description |
PROSITE profile | PS50090 | 4.484 | 125 | 149 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 1.46E-21 | 135 | 210 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.6E-19 | 136 | 156 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 24.756 | 150 | 204 | IPR017930 | Myb domain |
SMART | SM00717 | 1.6E-14 | 154 | 202 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.0E-15 | 155 | 198 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.9E-23 | 157 | 203 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.23E-12 | 159 | 198 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 332 aa Download sequence Send to blast |
MQPSSQSSRS DDDDILQLRR GPWTEEEDGL LIHYIALHGQ GRWNLLAKSA DARGFVLYRP 60 PSNNPQPLGA RFGFYWPPPN NPQSSGVGLD LYWSSPPTGC WTWSLPPLSN NPRPSGADLL 120 LPASIQQFLV TGCLRRSGKS CRLRWLNYLK PDVKRGNLSP EEQLLILELH LKWGNRWSRI 180 AEHLPGRTDN EIKNYWRTRV QKQAKHLNLD SNSAAFQQLI RNFWVPTLLH KIYGSIQPQN 240 PQPLLTTTYE DNSSHQPLTN SNTTQSTYFS PLPPLHANAH SAYYGMEAFS PPLFTGPEDY 300 FIDYDQVGEG NTSMDDFSVD SSLWSMDEIW VG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 8e-17 | 136 | 203 | 40 | 107 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor of phosphate (Pi) starvation-induced genes. Regulates negatively Pi starvation responses via the repression of gibberellic acid (GA) biosynthesis and signaling. Modulates root architecture, phosphatase activity, and Pi uptake and accumulation. {ECO:0000269|PubMed:19529828}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Slightly induced by salicylic acid (PubMed:16463103). Induced reversibly in response to phosphate (Pi) deficiency but repressed in the presence of Pi, specifically in the leaves. Availability of Pi increases with decreased levels (PubMed:19529828). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19529828}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019163166.1 | 1e-88 | PREDICTED: myb-related protein 305-like | ||||
Swissprot | Q9C9G7 | 2e-50 | MYB62_ARATH; Transcription factor MYB62 | ||||
TrEMBL | A0A1S4D8P8 | 9e-56 | A0A1S4D8P8_TOBAC; transcription factor MYB57-like isoform X2 | ||||
TrEMBL | A0A3Q7GB93 | 6e-56 | A0A3Q7GB93_SOLLC; Uncharacterized protein | ||||
STRING | Solyc05g009230.1.1 | 9e-57 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68320.1 | 9e-53 | myb domain protein 62 |
Publications ? help Back to Top | |||
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