PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001102.1_g00008.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family TCP
Protein Properties Length: 454aa    MW: 49051.4 Da    PI: 8.0404
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001102.1_g00008.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP113.23.5e-351402892112
                      TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...................... 65 
                              +g+kdrhsk+ T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak ai++l+++                      
  Itr_sc001102.1_g00008.1 140 TGRKDRHSKVFTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKNAIDKLAELppwnpnddasvipgsqegdvag 225
                              79**************************************************************8888666665555444444444 PP

                      TCP  66 .....ssssaseceaesssssasnsssg................................kaaksaakskksqksaasalnlak 112
                                   +s                    +                                ++ ++++ks ++ +s +s  n++ 
  Itr_sc001102.1_g00008.1 226 mpleqNS--------------------DssarydfpfqkhleaagnaagnspfilqedetQSIAETMKSFFPMNSGSSLMNFQS 289
                              4433211....................011222233333333333333344566666554555555566666666666666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.1E-31140205IPR005333Transcription factor, TCP
PROSITE profilePS5136932.437142200IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MYGGVSDHPN HLPHERPLAM PSYSIVSPDP RKKCVLGSQI GGEEKKKFLK IIVNLDSQWS  60
QETPQIFPSG QNPSFKNNNN NLQNLQALYH GNAVNSLGKT EDAKGSGGGK KAAGMKRGGA  120
GAGGGGEIVQ VEGGHIIRST GRKDRHSKVF TAKGPRDRRV RLSAHTAIQF YDVQDRLGYD  180
RPSKAVDWLI KKAKNAIDKL AELPPWNPND DASVIPGSQE GDVAGMPLEQ NSDSSARYDF  240
PFQKHLEAAG NAAGNSPFIL QEDETQSIAE TMKSFFPMNS GSSLMNFQSY HHELMPRASI  300
QTEDNLGLSL HTLQDHRRPA STSQQHALFS GQNPATFEAN FSRMVGWNGA AGNGGGESRV  360
GFFLNHPHHS IAPPPQAAAA VFSQGGAFSQ RESLQSNYSH LIPAWEERTA LSSAISNSHF  420
AAEFQVPARI HGEDEHGGGV AAIKPSSPPS NSHY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A5e-22147200154Putative transcription factor PCF6
5zkt_B5e-22147200154Putative transcription factor PCF6
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019159423.10.0PREDICTED: transcription factor TCP4-like
RefseqXP_019159425.10.0PREDICTED: transcription factor TCP4-like
TrEMBLA0A4D6FC191e-104A0A4D6FC19_PETHY; TCP9
STRINGXP_009783352.11e-99(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA66072234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53230.15e-60TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3