PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc001066.1_g00008.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

GeBP

Protein Properties

Length: 424aa MW: 46359.6 Da PI: 4.729

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc001066.1_g00008.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	117.9	5.6e-37	123	222	1	97
DUF573 1 klfqrlwseeDeivlLqGlidfkaktgk...spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfske 83 klfqrlw++eDei lLqG+++++a++g+ s ++d++afy+++k++++++++k+qlveK+rrLKkK+++ v+k+ gke +f+++ Itr_sc001066.1_g00008.1 123 KLFQRLWTDEDEIELLQGFLEYTAQRGAtnsSHHHDTTAFYDQIKSKLQLEFNKNQLVEKLRRLKKKYRNVVSKIGGGKEYVFKSA 208 579**********************98745555*********************************************** PP DUF573 84 hdqkifelskkiWg 97 hdq +fe+s+kiW Itr_sc001066.1_g00008.1 209 HDQATFEISSKIWS 222 ***********6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	3.9E-34	125	222	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 424 aa Download sequence Send to blast
MASDQHHTVY NDEDLEADDD EESLDRPPTV LDEEDDDEED VEDDSTSSSN LAAPDPLRPV 60 PPPPAAVMPS SADVTIAVAS VRADPIQLNS KRHLDNITVS AAATTVAVVE DKKPSAAFDD 120 SRKLFQRLWT DEDEIELLQG FLEYTAQRGA TNSSHHHDTT AFYDQIKSKL QLEFNKNQLV 180 EKLRRLKKKY RNVVSKIGGG KEYVFKSAHD QATFEISSKI WSNCGSAIRG GPVGPTAVVD 240 DGGYEDDYAN PNPNQIPNFI DHSPNLNSNS VDMKTPRSRK RSRAGAPVKV EEKQGLIQQH 300 YQPPPSANVA TPIANTTAAT PQTVMATPIP SLIEETVKSC LSPVFKELLN NVSHLNGGSK 360 GFGLGLALSP IPLGFGGGPL GAEIMADEKW RKQQILELEV YSKRLALVQD QIKAQLEELR 420 SMGS

Sequence ? help Back to Top

Protein Sequence Length: 424 aa Download sequence Send to blast

MASDQHHTVY NDEDLEADDD EESLDRPPTV LDEEDDDEED VEDDSTSSSN LAAPDPLRPV  60
PPPPAAVMPS SADVTIAVAS VRADPIQLNS KRHLDNITVS AAATTVAVVE DKKPSAAFDD  120
SRKLFQRLWT DEDEIELLQG FLEYTAQRGA TNSSHHHDTT AFYDQIKSKL QLEFNKNQLV  180
EKLRRLKKKY RNVVSKIGGG KEYVFKSAHD QATFEISSKI WSNCGSAIRG GPVGPTAVVD  240
DGGYEDDYAN PNPNQIPNFI DHSPNLNSNS VDMKTPRSRK RSRAGAPVKV EEKQGLIQQH  300
YQPPPSANVA TPIANTTAAT PQTVMATPIP SLIEETVKSC LSPVFKELLN NVSHLNGGSK  360
GFGLGLALSP IPLGFGGGPL GAEIMADEKW RKQQILELEV YSKRLALVQD QIKAQLEELR  420
SMGS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019187266.1	0.0	PREDICTED: probable transcription factor At3g04930
Swissprot	F4K5T4	4e-76	STKLU_ARATH; Probable transcription factor At5g28040
TrEMBL	A0A484K7R8	1e-170	A0A484K7R8_9ASTE; Uncharacterized protein
STRING	XP_009785461.1	1e-140	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4052	24	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28040.1	1e-70	DNA-binding storekeeper protein-related transcriptional regulator

Publications ? help Back to Top
García-Cano E,Hak H,Magori S,Lazarowitz SG,Citovsky V The Agrobacterium F-Box Protein Effector VirF Destabilizes the Arabidopsis GLABROUS1 Enhancer/Binding Protein-Like Transcription Factor VFP4, a Transcriptional Activator of Defense Response Genes. Mol. Plant Microbe Interact., 2018. 31(5): p. 576-586 [PMID:29264953]