PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc001064.1_g00006.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

GRAS

Protein Properties

Length: 686aa MW: 75389.2 Da PI: 5.8841

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc001064.1_g00006.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	302.1	1.3e-92	321	685	3	374
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 ++++++Ae + +g+++ aq +Larl+++ sp g+++qR+a+yf+eAL l+ +s+++ lp++ s+ + + ++ a+k+fse+s Itr_sc001064.1_g00006.1 321 DQIYKAAELILAGQFSHAQMILARLNHQLSPVGKSLQRAASYFKEALMLPLLMPGSSIS--LPSRVPSPVDFVFKMGAYKVFSEAS 404 57899*********************************************9666665..9999999999*********** PP GRAS 89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAe 170 Pil+f ++t Nqa+lea+ +e vHi Dfdi+ G+QW +++q+L +R+ +g+psl+iT+++sp++++ e++ ++e L++fA+ Itr_sc001064.1_g00006.1 405 PILQFMNFTSNQALLEALGDAEYVHIFDFDIGFGAQWSSFIQELPKRNnggrGGAPSLKITAFASPSTHHPVEISLMHESLTQFAN 490 ********************************************777777**************************** PP GRAS 171 elgvpfefnvlvakrledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFl 254 +gv+fe +v+ ++++ +++ +++p E++aVn+ + +l ++ + +++L+ +k+lsPk+vv e+ +++++ +F Itr_sc001064.1_g00006.1 491 DVGVKFELEVVNLDTFDPSSYQLSSFRPcgSEVVAVNFPI--WSLSNHLSA----LPSLLHYIKQLSPKIVVSLERGCERTELPFP 570 ******95555555444444444498****98..344333344....456************************ PP GRAS 255 erflealeyysalfdsl.eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakl 339 +++l+al+yy +l++s+ +ak+ + + ++k+Er+l++++i+++v + ++ Wr +++aGF pvp+s+++++qa++ Itr_sc001064.1_g00006.1 571 HHILNALKYYEVLLESMgAAKV--TPDMANKMERFLFQPSIESIVQGRLCF----PDQMPPWRTLFTSAGFLPVPFSNFTETQAEC 650 *************66664..77999************987776....999************************ PP GRAS 340 llrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 ++++ +++g++ve++++slvl+W++r+L+++ aWr Itr_sc001064.1_g00006.1 651 IMKRNQVRGFHVEKRQASLVLCWQRRELLTAMAWR 685 ********************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	43.802	293	665	IPR005202	Transcription factor GRAS
Pfam	PF03514	4.5E-90	321	685	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 686 aa Download sequence Send to blast
MIGMQYSNNS LQGKGEEEPK PFHFXGSNEP ISVLDKRRSP SPSTSTSASS SSFGCTAAVK 60 DAAAPAAVEE WVVGELQPLV PFEKFGLGLE DWECFLSESG GGGGGSDQSI LRWVSGAEFE 120 DPSSLHEIQG NAGLGDAADQ TNAGFGALIA SDNFFTNVSS SVIPISSLNS NIGKFGSTLN 180 HVNSQDSNLN FTPNNNLVPG LSFQEPEQKP QISNFQIPVV NQTQNATNRN VFVSPSYGGI 240 LHEEQLPPPA KRQNLEISNS QLPEIPLVGM SHGLLLGKQQ DFAQLQQQGM MGSGQHSSLL 300 VPKQEEVVMP HHQHQQQVVY DQIYKAAELI LAGQFSHAQM ILARLNHQLS PVGKSLQRAA 360 SYFKEALMLP LLMPGSSISL PSRVPSPVDF VFKMGAYKVF SEASPILQFM NFTSNQALLE 420 ALGDAEYVHI FDFDIGFGAQ WSSFIQELPK RNNGGRGGAP SLKITAFASP STHHPVEISL 480 MHESLTQFAN DVGVKFELEV VNLDTFDPSS YQLSSFRPCG SEVVAVNFPI WSLSNHLSAL 540 PSLLHYIKQL SPKIVVSLER GCERTELPFP HHILNALKYY EVLLESMGAA KVTPDMANKM 600 ERFLFQPSIE SIVQGRLCFP DQMPPWRTLF TSAGFLPVPF SNFTETQAEC IMKRNQVRGF 660 HVEKRQASLV LCWQRRELLT AMAWRC

Sequence ? help Back to Top

Protein Sequence Length: 686 aa Download sequence Send to blast

MIGMQYSNNS LQGKGEEEPK PFHFXGSNEP ISVLDKRRSP SPSTSTSASS SSFGCTAAVK  60
DAAAPAAVEE WVVGELQPLV PFEKFGLGLE DWECFLSESG GGGGGSDQSI LRWVSGAEFE  120
DPSSLHEIQG NAGLGDAADQ TNAGFGALIA SDNFFTNVSS SVIPISSLNS NIGKFGSTLN  180
HVNSQDSNLN FTPNNNLVPG LSFQEPEQKP QISNFQIPVV NQTQNATNRN VFVSPSYGGI  240
LHEEQLPPPA KRQNLEISNS QLPEIPLVGM SHGLLLGKQQ DFAQLQQQGM MGSGQHSSLL  300
VPKQEEVVMP HHQHQQQVVY DQIYKAAELI LAGQFSHAQM ILARLNHQLS PVGKSLQRAA  360
SYFKEALMLP LLMPGSSISL PSRVPSPVDF VFKMGAYKVF SEASPILQFM NFTSNQALLE  420
ALGDAEYVHI FDFDIGFGAQ WSSFIQELPK RNNGGRGGAP SLKITAFASP STHHPVEISL  480
MHESLTQFAN DVGVKFELEV VNLDTFDPSS YQLSSFRPCG SEVVAVNFPI WSLSNHLSAL  540
PSLLHYIKQL SPKIVVSLER GCERTELPFP HHILNALKYY EVLLESMGAA KVTPDMANKM  600
ERFLFQPSIE SIVQGRLCFP DQMPPWRTLF TSAGFLPVPF SNFTETQAEC IMKRNQVRGF  660
HVEKRQASLV LCWQRRELLT AMAWRC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	6e-30	302	684	2	378	Protein SCARECROW
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019155188.1	0.0	PREDICTED: scarecrow-like protein 6 isoform X2
Refseq	XP_019155189.1	0.0	PREDICTED: scarecrow-like protein 6 isoform X2
TrEMBL	A0A1J6IGI6	0.0	A0A1J6IGI6_NICAT; Scarecrow-like protein 6
STRING	XP_009628960.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6986	19	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00150.1	1e-98	GRAS family protein