PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001055.1_g00004.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 181aa    MW: 20311.7 Da    PI: 7.1802
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001055.1_g00004.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.53.4e-18755254
                      AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkle 54
                             +++GVr+++ +g+Wv+eIr+p        +r++lg++ tae+Aa+a+++a++ + 
  Itr_sc001055.1_g00004.1  7 RFRGVRQRH-WGSWVSEIRHP-----LlkTRIWLGTYETAEDAARAYDEAARLMC 55
                             69******9.**********8.....334**********************8775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.17E-31666No hitNo description
SMARTSM003801.8E-38770IPR001471AP2/ERF domain
PROSITE profilePS5103220.389764IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-33765IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-20766IPR016177DNA-binding domain
PfamPF008474.3E-11756IPR001471AP2/ERF domain
PRINTSPR003672.0E-10819IPR001471AP2/ERF domain
PRINTSPR003672.0E-103046IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MARPQQRFRG VRQRHWGSWV SEIRHPLLKT RIWLGTYETA EDAARAYDEA ARLMCGQMAR  60
TNFPHNAGDH QASSSRKFLS ANLIAKLQRC QMTSHSVAKR PTAQARAPEQ EYPPPAVSRG  120
DGAPAKNLEQ SGAETPENWV GCQGQEGSGQ EFKALEDHHI QQMIEELLDY GSIELCSVLQ  180
E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-15864663ATERF1
3gcc_A3e-15864663ATERF1
5wx9_A4e-157651473Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU1909810.0EU190981.1 Ipomoea batatas AP/ERF transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019168755.11e-125PREDICTED: ethylene-responsive transcription factor ERF003-like
SwissprotQ94AW55e-62ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLE6Y3691e-132E6Y369_IPOBA; AP/ERF transcription factor
STRINGXP_009771954.15e-78(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13622476
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.15e-50ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]