PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Itr_sc001044.1_g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 200aa MW: 22420.1 Da PI: 9.7539 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49 | 1.4e-15 | 17 | 64 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+++Ed++l+d+++++G g W+ ++ g+ R+ k+c++rw ++l Itr_sc001044.1_g00003.1 17 KGAWSKQEDQKLLDYIRKHGEGGWRDLPKAAGLLRCSKSCRLRWMNHL 64 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 39.8 | 1.1e-12 | 70 | 143 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT............................-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg............................tWktIartmgkgRtlkqcksrwqky 47 rg++ +E++l+++++++lG +W++Ia +++ gRt++++k++w+++ Itr_sc001044.1_g00003.1 70 RGNFGDDEEDLIIKLHALLGDSgdsmtlrvsvgrgsmrydgfsnlsggfgRWSLIAGRLP-GRTDEEVKNYWNSH 143 899*****************88**************************************.***********987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 20.657 | 12 | 68 | IPR017930 | Myb domain |
SMART | SM00717 | 1.3E-11 | 16 | 66 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.2E-14 | 17 | 64 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.45E-19 | 18 | 90 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.0E-19 | 18 | 71 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.87E-10 | 19 | 64 | No hit | No description |
PROSITE profile | PS51294 | 9.29 | 69 | 148 | IPR017930 | Myb domain |
SMART | SM00717 | 4.2E-11 | 69 | 146 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.9E-10 | 70 | 143 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.5E-20 | 72 | 148 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.62E-7 | 117 | 144 | No hit | No description |
SuperFamily | SSF46689 | 6.66E-8 | 118 | 153 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 200 aa Download sequence Send to blast |
MRKASCDHSH HHHEINKGAW SKQEDQKLLD YIRKHGEGGW RDLPKAAGLL RCSKSCRLRW 60 MNHLKQTAKR GNFGDDEEDL IIKLHALLGD SGDSMTLRVS VGRGSMRYDG FSNLSGGFGR 120 WSLIAGRLPG RTDEEVKNYW NSHIKKKLLD MGIDPNNHRL SCTHNTAAQT SGEKSRATSP 180 EKQRVESDGE VSDAGSSNVR |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 4e-20 | 14 | 148 | 24 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By nitrogen, salicylic acid, NaCl and abscisic acid (ABA). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:18541146, ECO:0000269|PubMed:9839469}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_019160100.1 | 1e-108 | PREDICTED: transcription factor MYB3-like | ||||
Swissprot | Q9S9K9 | 2e-57 | MYB3_ARATH; Transcription factor MYB3 | ||||
TrEMBL | A0A4D6UZB5 | 5e-70 | A0A4D6UZB5_9ROSI; MYB transcription factor 14 | ||||
STRING | POPTR_0010s12420.1 | 7e-68 | (Populus trichocarpa) | ||||
STRING | XP_010044170.1 | 8e-68 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G22640.1 | 9e-60 | myb domain protein 3 |