PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001033.1_g00008.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bZIP
Protein Properties Length: 288aa    MW: 31599.4 Da    PI: 4.6569
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001033.1_g00008.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_146.48.6e-15222268248
                              XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                   bZIP_1   2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 
                              ++l+r+rr++kNRe+A rsR+RK+a++ eLe  + +Le+eN++L  e
  Itr_sc001033.1_g00008.1 222 AALQRQRRMIKNRESAARSRERKQAYQVELESMAVKLEEENEQLLRE 268
                              689***************************************99765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PRINTSPR000418.2E-588110IPR001630cAMP response element binding (CREB) protein
PRINTSPR000418.2E-5220236IPR001630cAMP response element binding (CREB) protein
SMARTSM003381.1E-10221279IPR004827Basic-leucine zipper domain
PfamPF001703.2E-13222268IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.565223268IPR004827Basic-leucine zipper domain
CDDcd147074.06E-17225270No hitNo description
SuperFamilySSF579598.44E-11225269No hitNo description
Gene3DG3DSA:1.20.5.1708.4E-13226268No hitNo description
PROSITE patternPS000360228243IPR004827Basic-leucine zipper domain
PRINTSPR000418.2E-5238258IPR001630cAMP response element binding (CREB) protein
PRINTSPR000418.2E-5258275IPR001630cAMP response element binding (CREB) protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MATSKLMASS STSQTSDIRR KASPSSSSTT LPAFFHNQQY ASKSQGDDSN PDSNLMTLDR  60
FLENVYADDQ AAAGGALLSA GIARRDVAGD TEPVGESPAN APVVRKTVED VWREIVEGKR  120
LQQKEAPTVE CKEEEMDEMM TLEDFLVKAG AVDEPAVAAG HGEVKIEPDG ERFSGGSFMF  180
DSPILGTPQH SMEDVVGFGN VMEASGSGRA KRRAILEPLD KAALQRQRRM IKNRESAARS  240
RERKQAYQVE LESMAVKLEE ENEQLLREQV IHFDMPVSYS LQCGILLL
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. {ECO:0000269|PubMed:8146148}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019154903.11e-176PREDICTED: G-box-binding factor 4-like
SwissprotP427772e-37GBF4_ARATH; G-box-binding factor 4
TrEMBLA0A328DJT41e-103A0A328DJT4_9ASTE; Uncharacterized protein
STRINGSolyc04g071510.2.19e-91(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27712452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44080.12e-31bZIP family protein