PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc001023.1_g00005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | NF-YC | ||||||||
Protein Properties | Length: 255aa MW: 28250.8 Da PI: 5.5991 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 176.1 | 3.4e-55 | 77 | 180 | 1 | 101 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaav 83 ql++fw++q ie+++dfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlr+w+h+eenkrrtl+k+diaaa+ Itr_sc001023.1_g00005.1 77 QLQQFWANQyqdIEHVSDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEMFILELTLRAWNHTEENKRRTLQKNDIAAAI 162 89******9999************************************************************************** PP NF-YC 84 trtdifdflvdivprdel 101 trtdifdflvdivpr++l Itr_sc001023.1_g00005.1 163 TRTDIFDFLVDIVPREDL 180 ***************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 1.18E-33 | 64 | 171 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.5E-22 | 99 | 162 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 2.7E-38 | 100 | 177 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MDHQGNGQPP GMGIVTSSGA AMAYGAPSYQ SNQMTVSIPA ASPGAIQSPQ TVGLPTSSAQ 60 LAYQHIQQQQ QQQLQQQLQQ FWANQYQDIE HVSDFKNHSL PLARIKKIMK ADEDVRMISA 120 EAPVVFARAC EMFILELTLR AWNHTEENKR RTLQKNDIAA AITRTDIFDF LVDIVPREDL 180 KDEVLASIPR GTLPVGGPTD VPYYYMAPQS ASQVGASGGM YMGKPVDQTL YGQQPRPYMA 240 QTMWPQQQQQ PPSDS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 1e-60 | 85 | 177 | 3 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 149 | 155 | RRTLQKN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Interacts with REF6 to directly regulate SOC1 transcription in response to flowering signals from photoperiod and gibberellic acid pathways (PubMed:25105952). {ECO:0000250, ECO:0000269|PubMed:25105952}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019150090.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit C-9-like | ||||
Refseq | XP_019150091.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit C-9-like | ||||
Swissprot | Q8L4B2 | 9e-83 | NFYC9_ARATH; Nuclear transcription factor Y subunit C-9 | ||||
TrEMBL | A0A314L5H7 | 1e-131 | A0A314L5H7_NICAT; Nuclear transcription factor y subunit c-9 | ||||
STRING | XP_009590081.1 | 1e-130 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3422 | 24 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08970.4 | 6e-84 | nuclear factor Y, subunit C9 |