PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc001016.1_g00005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | CO-like | ||||||||
Protein Properties | Length: 417aa MW: 47286.7 Da PI: 6.0463 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 28.3 | 3.6e-09 | 18 | 61 | 3 | 40 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +r C+ + + +++++C ++ +lC++C ++ H+ H++v Itr_sc001016.1_g00005.1 18 ARACDSCIRRRARWYCAADDAFLCQSCDSSVHNAnllarrHERV 61 578*****************************768888889877 PP | |||||||
2 | CCT | 65.5 | 1.5e-22 | 361 | 404 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr++R+F+KkirYe+RK +Ae+RpR+KGrFvk+a Itr_sc001016.1_g00005.1 361 REARVSRYREKRRKRLFSKKIRYEVRKLNAEKRPRMKGRFVKRA 404 9*****************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.879 | 16 | 63 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 2.6E-9 | 16 | 63 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 2.7E-7 | 18 | 61 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.97E-10 | 19 | 63 | No hit | No description |
PROSITE profile | PS51017 | 16.013 | 361 | 403 | IPR010402 | CCT domain |
Pfam | PF06203 | 2.7E-17 | 361 | 403 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0016020 | Cellular Component | membrane | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 417 aa Download sequence Send to blast |
MVSSSDRKLA SAVGAKTARA CDSCIRRRAR WYCAADDAFL CQSCDSSVHN ANLLARRHER 60 VRLQSSDLKT PDDFPSLESL ARSWPHGFTR KARTPRGRKH AKPKSEPEQS FTKHPFDLVP 120 EIYSDENSHN DESDEQLLYR VPVFDGFAAE MCTSGRQNEA GAENIPDVRT NIPASLDFRH 180 NKDDDGNKPP GIVPSEIELA EFAADVESLL GKGLDDESFN MEGLGLFSNF NKVKLETDEE 240 AAIANNHNVA MKFDNCDDNS PVAMCDEEYD DRGGEFATIL QQSDDFDYKT EKKKILLKLD 300 YEGVITAWAD QRSPWTNGER PDLDSNDCWP DFTDGWGTIH NPYGEMGAMS VGHATIMDEG 360 REARVSRYRE KRRKRLFSKK IRYEVRKLNA EKRPRMKGRF VKRANFVAPL SFPLITK |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 372 | 387 | RKRLFSKKIRYEVRKL |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF986331 | 2e-35 | KF986331.1 Lagerstroemia indica zinc finger protein CONSTANS-LIKE 5 (COL5) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019164697.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 16-like | ||||
TrEMBL | A0A3Q9WL22 | 1e-151 | A0A3Q9WL22_PETHY; Zinc finger protein CONSTANS-like 16 | ||||
STRING | XP_009627333.1 | 1e-150 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1539 | 24 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25440.1 | 8e-81 | B-box type zinc finger protein with CCT domain |