PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc001014.1_g00016.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C2H2

Protein Properties

Length: 432aa MW: 47276.4 Da PI: 9.3849

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc001014.1_g00016.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.5	1.2e-05	65	87	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Itr_sc001014.1_g00016.1 65 FVCEICNKGFQRDQNLQLHRRGH 87 89*******************88 PP
2	zf-C2H2	12.1	0.00059	142	164	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H + + Itr_sc001014.1_g00016.1 142 WKCDKCSKRYAVQSDWKAHSKIC 164 58*****************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	9.91E-8	64	87	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.4E-5	64	87	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.949	65	87	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.017	65	87	IPR015880	Zinc finger, C2H2-like
Pfam	PF12171	6.7E-5	65	87	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE pattern	PS00028	0	67	87	IPR007087	Zinc finger, C2H2
SMART	SM00355	78	107	137	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	3.0E-5	130	163	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	9.91E-8	137	162	No hit	No description
SMART	SM00355	140	142	162	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 432 aa Download sequence Send to blast
MIKGMVVDES MSNLTSASNE ASISSTSNNP AQPAAKKKRN LPGNPDPEAE VVALSPRTLL 60 ATNRFVCEIC NKGFQRDQNL QLHRRGHNLP WKLKQRNKQE VIKKKVYVCP ETSCVHHDPS 120 RALGDLTGIK KHYSRKHGEK KWKCDKCSKR YAVQSDWKAH SKICGTREYR CDCGTLFSRR 180 DSFITHRAFC DALAEESVRA ISAPTNNPLL SSHIALQQPF PVLKQEPPPL PSFRPLRAAA 240 QPELPPWLAC PPQAAGPSSA AADLSAQLFG NIHENPNMSA TALLQKAAQM GVTSSTNNNN 300 LVGAASGNVI GPHQGPVHMS APAGGFFSEE LALASFGVPN KPQTHHANLT SGCMETSLTA 360 PSPHRNMIIN SASTRDFLTL GAFPHHQRDT FLNMASIDHM PPPSSSSSSF DHLNQNQNLN 420 QNHNQNQPPW LN

Sequence ? help Back to Top

Protein Sequence Length: 432 aa Download sequence Send to blast

MIKGMVVDES MSNLTSASNE ASISSTSNNP AQPAAKKKRN LPGNPDPEAE VVALSPRTLL  60
ATNRFVCEIC NKGFQRDQNL QLHRRGHNLP WKLKQRNKQE VIKKKVYVCP ETSCVHHDPS  120
RALGDLTGIK KHYSRKHGEK KWKCDKCSKR YAVQSDWKAH SKICGTREYR CDCGTLFSRR  180
DSFITHRAFC DALAEESVRA ISAPTNNPLL SSHIALQQPF PVLKQEPPPL PSFRPLRAAA  240
QPELPPWLAC PPQAAGPSSA AADLSAQLFG NIHENPNMSA TALLQKAAQM GVTSSTNNNN  300
LVGAASGNVI GPHQGPVHMS APAGGFFSEE LALASFGVPN KPQTHHANLT SGCMETSLTA  360
PSPHRNMIIN SASTRDFLTL GAFPHHQRDT FLNMASIDHM PPPSSSSSSF DHLNQNQNLN  420
QNHNQNQPPW LN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	1e-35	138	207	3	72	Zinc finger protein JACKDAW
5b3h_F	1e-35	138	207	3	72	Zinc finger protein JACKDAW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019190569.1	0.0	PREDICTED: protein indeterminate-domain 7-like
Swissprot	Q8H1F5	1e-117	IDD7_ARATH; Protein indeterminate-domain 7
TrEMBL	A0A2R6Q314	1e-140	A0A2R6Q314_ACTCH; Protein indeterminate-domain like
STRING	XP_009793158.1	1e-137	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA103	24	350

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55110.1	1e-114	indeterminate(ID)-domain 7

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]