PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001010.1_g00012.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 311aa    MW: 33902.8 Da    PI: 8.2701
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001010.1_g00012.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.1e-05128147120
                              EEETTTTEEESSHHHHHHHH CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                              ++C+ C+k+F+r  n++ H+
  Itr_sc001010.1_g00012.1 128 FSCTVCHKTFNRFNNMQMHM 147
                              89*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.86E-5121150No hitNo description
PROSITE profilePS501579.889128155IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.1E-4128147IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280130150IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.9E-4206240IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010087Biological Processphloem or xylem histogenesis
GO:0010305Biological Processleaf vascular tissue pattern formation
GO:0010588Biological Processcotyledon vascular tissue pattern formation
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MPSNHEELDD ASTVLSLGPP GQQHPQNPQN HMMMKTRFHD VLFSSSSSSS SSAYNTLKDH  60
QSLQNYGGGG GGRGVTVAFH MGPPGASSSS TSFNPSGGDM AAAGLTLGQG HQYWIPTPAQ  120
ILVGPTQFSC TVCHKTFNRF NNMQMHMWGH GSQYRKGPES LKGTKPSSSS SSSSSMLRLL  180
PCFCCAEGCK NNIRHAKAKP LKDFRTLQTH YKRKHGAKQF ACRKCAKAFA VRGDWKTHEK  240
NCGRLWFCVC GSDFKHKRSL KDHVRAFGEG HAAHSESALL CGYDDDDCEE SDVAIDEEEE  300
EGSAASAGFK Y
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000305|PubMed:20541552}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019164607.11e-154PREDICTED: zinc finger protein WIP6-like
SwissprotQ9FX681e-112ZWIP6_ARATH; Zinc finger protein WIP6
TrEMBLA0A2N9F1Q51e-115A0A2N9F1Q5_FAGSY; Uncharacterized protein
STRINGVIT_01s0011g03100.t011e-112(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46224133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13290.12e-99C2H2-like zinc finger protein