PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000997.1_g00005.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 455aa    MW: 51631.9 Da    PI: 4.7404
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000997.1_g00005.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.57.9e-1486131352
                      AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkk 52 
                               kGVr++k +g++++eIr p        kr ++g+f++ e+Aa+a++a + +
  Itr_sc000997.1_g00005.1  86 PKGVRQRK-WGKFAVEIRNP-----IekKRKWVGTFDSVEDAARAYDAQKAE 131
                              59*****9.**********8.....335*******************96655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103216.785143IPR001471AP2/ERF domain
PRINTSPR003676.2E-68697IPR001471AP2/ERF domain
PfamPF008471.6E-986133IPR001471AP2/ERF domain
SMARTSM003806.5E-1087152IPR001471AP2/ERF domain
CDDcd000181.94E-1787127No hitNo description
Gene3DG3DSA:3.30.730.101.6E-1787132IPR001471AP2/ERF domain
SuperFamilySSF541712.94E-1387132IPR016177DNA-binding domain
PRINTSPR003676.2E-6108124IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MIKEPYRVKN ERGIECLNSV QKVKIIYNDP DATDSDTDDD DDKNAHSKRV VKEVIIPIAK  60
NPSKISDKEQ IHSEISKEFA RKVGLPKGVR QRKWGKFAVE IRNPIEKKRK WVGTFDSVED  120
AARAYDAQKA EFERMLSMDK KNPCFETSVA TSQESGSEFL EDQLCQEFNL GLEFEDPTNT  180
KKLKVNQTHH GSSATLVDEP IPRIPNESKR LTSSSIGHLI LDTEKNARVD NEPSRGIPNE  240
PKLSTSPLIS QLILEFEENV RVDNEPIPGI PDEPKLSTSP SISQLIYEFE ENVRVGNEPI  300
PGIPNEPKLS TSPSISQLIF DTEKNARTGN EPILRIPNEP HLSTSPSISH LILDTEENAR  360
VGNDLRRLGF EHNDFVNVNI SRQLCHHGCN SEKGIQMQCD FRCLNFEDFP CGDGSKDMLD  420
SLWMEDVVEI RMAELNKEDL QWLNEIFITD ERVSQ
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA127181519
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.22e-18ERF family protein