PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000995.1_g00022.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | LBD | ||||||||
Protein Properties | Length: 201aa MW: 22143 Da PI: 8.1337 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 95.7 | 4.9e-30 | 2 | 103 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 +C++C++lr++C+++C+l++ + p++q++++ +v+k+FG++ ++++l+++ ++r+++++sl++eA+ r+ +Pv+Gavg+++ Itr_sc000995.1_g00022.1 2 SCNGCRILRKGCNENCILRESLqgittPQAQANATLFVAKFFGRAGLMSFLSSVTASQRPALFQSLLFEACGRTVNPVHGAVGLLW 87 6************************************************************************************* PP DUF260 82 klqqqleqlkaelall 97 +++++l+q+++e++l+ Itr_sc000995.1_g00022.1 88 TGNWHLCQTAVETVLR 103 **********998875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 18.362 | 1 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.9E-26 | 2 | 101 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence Send to blast |
MSCNGCRILR KGCNENCILR ESLQGITTPQ AQANATLFVA KFFGRAGLMS FLSSVTASQR 60 PALFQSLLFE ACGRTVNPVH GAVGLLWTGN WHLCQTAVET VLRGGVLHAP SDFAGDSAEE 120 TDDAKLFNPH EASVRAVIDD LDLGLRMSSE GKVNRQTAMR RRSRRRGTPS EESEITTSES 180 SYAYRQNEQQ GNDVKLLRLF F |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019166456.1 | 1e-119 | PREDICTED: LOB domain-containing protein 38-like | ||||
Swissprot | Q9SN23 | 1e-58 | LBD38_ARATH; LOB domain-containing protein 38 | ||||
TrEMBL | A0A2G2Y2H3 | 5e-90 | A0A2G2Y2H3_CAPAN; LOB domain-containing protein 39 | ||||
TrEMBL | M1CF43 | 7e-90 | M1CF43_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400066165 | 1e-90 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA966 | 24 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49940.1 | 1e-60 | LOB domain-containing protein 38 |