PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000994.1_g00004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | Whirly | ||||||||
Protein Properties | Length: 219aa MW: 24191.8 Da PI: 10.1027 | ||||||||
Description | Whirly family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Whirly | 195 | 1.1e-60 | 44 | 181 | 2 | 139 |
Whirly 2 vyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsne 87 +yk+ka+l+v++++ptf++l+sg+lk++r+G+++l++ +a++erkydWekkq falsatev++l++l++ +sceffhdp++ +sn+ Itr_sc000994.1_g00004.1 44 IYKGKASLSVEPRLPTFSKLNSGALKVERKGSIMLTFLPAVGERKYDWEKKQMFALSATEVGTLLNLGPSDSCEFFHDPSMLQSNA 129 9************************************************************************************* PP Whirly 88 GkvrkalkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139 G+vrk+l+v+ l dGsG+f++lsv n+ k+n++++vPv+ aef+v+r++++ Itr_sc000994.1_g00004.1 130 GEVRKTLSVKALGDGSGYFMSLSVVNNAHKTNDRLTVPVTGAEFSVMRTAFN 181 *************************************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.30.31.10 | 6.6E-75 | 31 | 201 | IPR009044 | ssDNA-binding transcriptional regulator |
SuperFamily | SSF54447 | 7.14E-63 | 37 | 203 | IPR009044 | ssDNA-binding transcriptional regulator |
Pfam | PF08536 | 1.3E-58 | 44 | 178 | IPR013742 | Plant transcription factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006281 | Biological Process | DNA repair | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005739 | Cellular Component | mitochondrion | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MLKLSKLLGT SLRGFSSQAG MPIAKKYFEA DGTLRKKVFA PYTIYKGKAS LSVEPRLPTF 60 SKLNSGALKV ERKGSIMLTF LPAVGERKYD WEKKQMFALS ATEVGTLLNL GPSDSCEFFH 120 DPSMLQSNAG EVRKTLSVKA LGDGSGYFMS LSVVNNAHKT NDRLTVPVTG AEFSVMRTAF 180 NFALPHIMGW DQYTNLQQTN TSELPTGNVA QFAKSEWER |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3n1h_A | 2e-88 | 30 | 195 | 2 | 168 | StWhy2 |
3n1i_A | 2e-88 | 30 | 195 | 2 | 168 | protein StWhy2 |
3n1j_A | 2e-88 | 30 | 195 | 2 | 168 | Protein StWhy2 |
3n1k_A | 2e-88 | 30 | 195 | 2 | 168 | protein StWhy2 |
3n1l_A | 2e-88 | 30 | 195 | 2 | 168 | protein StWhy2 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Single-stranded DNA-binding protein that may be involved in the maintenance of mitochondrial genome stability by preventing break-induced DNA rearrangements. {ECO:0000269|PubMed:21911368}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019151828.1 | 1e-158 | PREDICTED: single-stranded DNA-bindig protein WHY2, mitochondrial | ||||
Swissprot | D9J034 | 4e-94 | WHY2_SOLTU; Single-stranded DNA-binding protein WHY2, mitochondrial | ||||
TrEMBL | A0A328DPP0 | 1e-113 | A0A328DPP0_9ASTE; Uncharacterized protein | ||||
STRING | XP_009772771.1 | 7e-95 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9782 | 22 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71260.1 | 9e-86 | WHIRLY 2 |