PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000993.1_g00005.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GRAS
Protein Properties Length: 546aa    MW: 61742.5 Da    PI: 4.5688
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000993.1_g00005.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS250.37.4e-771745282373
                     GRAS   2 velLlecAeavssgdlelaqalLarlsel..aspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklf 84 
                              ++lLl  A+a+++g++ la+ ++ +l++l  +s++    + Rla yft++L  + ++            ++++  +  +++a++++
  Itr_sc000993.1_g00005.1 174 TDLLLMGAQAIQAGNKDLASMIVLKLNNLqiSSEEEtGHLDRLALYFTQGLVLKTMN----------FGDQNW--QLGSMSAFQML 247
                              689999*********************9986555555689***********887776..........444443..56778999*** PP

                     GRAS  85 sevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAe 170
                              +e+sP++kf+h+taNqaIlea+++++ vHiiDfdi++G+QWp+L+ +La+R++   slRiT+++  e++    +++tg+rL++fA+
  Itr_sc000993.1_g00005.1 248 QEISPYIKFAHFTANQAILEATQSQRDVHIIDFDIMEGIQWPPLMAELADRENA--SLRITAMVT-EPQTWAHTQQTGKRLHEFAN 330
                              ***************************************************776..9******99.7789999************* PP

                     GRAS 171 elgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe....adhnses 252
                              +++++f+f+ ++ ++  + +le+++   +  +a  +++qlh  ++es  ++     +L+ +++lsP+++++ve+e    + + s s
  Itr_sc000993.1_g00005.1 331 SINLSFSFDQILLTK--EQDLEQIQGLGNNPIANLMIHQLHIPHRESSLIK----IFLNGLRNLSPQMIIMVEEElfniSRTPSMS 410
                              *********985554..4444666666666666666666665554445555....5*******************7653344778* PP

                     GRAS 253 Flerflealeyysalfdsl.eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerlee.aGFkpvplsekaakq 336
                              F+e f ea+++y++l dsl     +  + +++++E+e+lg++iv++v +  + +rer+     W++ + +  GFk++p+s+ +++q
  Itr_sc000993.1_g00005.1 411 FVEFFREAIHHYTSLSDSLqGGFCGGYKLAQRVIEKEFLGPRIVDCVRQFPSGKRERQ----IWSQGVYSlKGFKAIPMSSCNVSQ 492
                              *******************55555666699********************99977665....5**9876549************** PP

                     GRAS 337 aklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                               k+l++ ++  g+ v++e+  l l+Wk+rpL+++S W
  Itr_sc000993.1_g00005.1 493 GKYLVSLFN-GGFWVQHEKCRLSLCWKSRPLITASIW 528
                              *********.89************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098536.684147510IPR005202Transcription factor GRAS
PfamPF035142.6E-74174528IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
MEFESFDEVS LSPSYIHEFP QHGSKNSSVT SWVVDYGQEY GLEAGTDSFD SWVIDCGQEY  60
GLKVHTGGSV GSWVTECGQE YELEVCTDNS VGSWVTDYGQ KDHYSKDVDI QECLQLETDI  120
MDLDFIDEDA VFSQNREQET PTEKAGASGF LTPENYTSHL KTIQEELMEE TSLTDLLLMG  180
AQAIQAGNKD LASMIVLKLN NLQISSEEET GHLDRLALYF TQGLVLKTMN FGDQNWQLGS  240
MSAFQMLQEI SPYIKFAHFT ANQAILEATQ SQRDVHIIDF DIMEGIQWPP LMAELADREN  300
ASLRITAMVT EPQTWAHTQQ TGKRLHEFAN SINLSFSFDQ ILLTKEQDLE QIQGLGNNPI  360
ANLMIHQLHI PHRESSLIKI FLNGLRNLSP QMIIMVEEEL FNISRTPSMS FVEFFREAIH  420
HYTSLSDSLQ GGFCGGYKLA QRVIEKEFLG PRIVDCVRQF PSGKRERQIW SQGVYSLKGF  480
KAIPMSSCNV SQGKYLVSLF NGGFWVQHEK CRLSLCWKSR PLITASIWVP TTSSISHSLS  540
RSTSFD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A6e-3918153226381Protein SCARECROW
5b3h_D6e-3918153226381Protein SCARECROW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019177211.10.0PREDICTED: nodulation-signaling pathway 2 protein-like
TrEMBLA0A1U7VG120.0A0A1U7VG12_NICSY; nodulation-signaling pathway 2 protein-like
STRINGXP_009761269.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA133661417
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.12e-51GRAS family protein