PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000988.1_g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | LBD | ||||||||
Protein Properties | Length: 209aa MW: 22506.7 Da PI: 8.2126 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 90.9 | 1.5e-28 | 2 | 104 | 1 | 98 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 +C++C+vlrr+C +C+l+p++ +++q++++ +v k+FG+s ++++++++p ++r+++++sl+yeA+ r+ +Pv+Gavg+++ Itr_sc000988.1_g00003.1 2 SCNGCRVLRRGCGVNCILRPCLeeidnAQAQANATLFVSKFFGRSDLMSFISSVPITRRPALFKSLLYEACGRTVNPVSGAVGLLS 87 6*********************8888777889****************************************************** PP DUF260 82 klqqqleqlkaelallk 98 +++++++ ++e++l++ Itr_sc000988.1_g00003.1 88 TGNWHVCVQAVETVLAG 104 ********999988765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 18.4 | 1 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.3E-25 | 2 | 101 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MSCNGCRVLR RGCGVNCILR PCLEEIDNAQ AQANATLFVS KFFGRSDLMS FISSVPITRR 60 PALFKSLLYE ACGRTVNPVS GAVGLLSTGN WHVCVQAVET VLAGGALQPI ATDFLSPPSF 120 DEASRIFLHE GAWKIPEVSV VTQSQPSDPR KHQMPTAGRG AGNNRKRVSS AAFASETETE 180 TSSEVYESGC RSVRDIVGGK EPKLLNLFV |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019174311.1 | 1e-124 | PREDICTED: LOB domain-containing protein 39-like | ||||
Swissprot | Q9SZE8 | 5e-56 | LBD39_ARATH; LOB domain-containing protein 39 | ||||
TrEMBL | A0A484LFN0 | 4e-80 | A0A484LFN0_9ASTE; Uncharacterized protein | ||||
STRING | Solyc04g077990.2.1 | 2e-70 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA966 | 24 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37540.1 | 8e-58 | LOB domain-containing protein 39 |