PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000987.1_g00005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | GRAS | ||||||||
Protein Properties | Length: 179aa MW: 19634.5 Da PI: 7.6421 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 25.5 | 1.5e-08 | 6 | 57 | 4 | 55 |
GRAS 4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar 55 ++ +cA+a+ +g+++ +q+lL lselas +gd+++Rla++ ++ L ++l + Itr_sc000987.1_g00005.1 6 VVNHCATAIMAGNMNWVQHLLYVLSELASLTGDANHRLATHGLQVLTHHLGS 57 6789******************************************999876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03514 | 5.1E-6 | 6 | 57 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 179 aa Download sequence Send to blast |
MSKDKVVNHC ATAIMAGNMN WVQHLLYVLS ELASLTGDAN HRLATHGLQV LTHHLGSGSS 60 FAGVLTFCVN HYKILQGVAD DFQRHKFVVS HPKQLRELVD PPGSSVATGP AQILEFPMKS 120 NATTVDEKEG GREGKQPPPV TSIFTVDQGS SYYKCWVQMS FIFIEKCKPD PLAVDSIKI |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4949 | 21 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13840.1 | 7e-15 | GRAS family protein |